Harvest for Moss et al 2016 Created 13 Oct 13:29

Stage: completed
Fetched: 13 Oct 13:29
Validated: 13 Oct 13:29
Deltas Created 13 Oct 13:29
Units Normalized: 13 Oct 13:30
Ancestry Built: 13 Oct 13:30
Nodes Matched: 13 Oct 13:30
Names Parsed: 13 Oct 13:30
New Models Stored: 13 Oct 13:29
Indexed: 13 Oct 13:30
Completed: 13 Oct 13:31
Time to Harvest: less than a minute

Harvesting Log

(207 lines)
[INFO] [2023-10-13 13:29:49] Created harvest instance #4449
[STOP] [2023-10-13 13:29:49] create_harvest_instance
[START] [2023-10-13 13:29:49] fetch_files
[STOP] [2023-10-13 13:29:49] fetch_files
[START] [2023-10-13 13:29:49] validate_each_file
[INFO] [2023-10-13 13:29:49] Looping over 8 formats...
[INFO] [2023-10-13 13:29:49] ...agents (/app/public/data/moss_et_al_moss_/agents.txt)
[INFO] [2023-10-13 13:29:49] Valid: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__agents_30799.csv (0 lines)
[INFO] [2023-10-13 13:29:49] ...refs (/app/public/data/moss_et_al_moss_/references.txt)
[INFO] [2023-10-13 13:29:49] Valid: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__refs_30798.csv (623 lines)
[INFO] [2023-10-13 13:29:49] ...nodes (/app/public/data/moss_et_al_moss_/taxa.txt)
[INFO] [2023-10-13 13:29:49] Valid: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__nodes_30796.csv (300 lines)
[INFO] [2023-10-13 13:29:49] ...media (/app/public/data/moss_et_al_moss_/media.txt)
[INFO] [2023-10-13 13:29:49] Valid: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__media_30795.csv (0 lines)
[INFO] [2023-10-13 13:29:49] ...vernaculars (/app/public/data/moss_et_al_moss_/common names.txt)
[INFO] [2023-10-13 13:29:49] Valid: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__vernaculars_30797.csv (0 lines)
[INFO] [2023-10-13 13:29:49] ...occurrences (/app/public/data/moss_et_al_moss_/occurrences.txt)
[INFO] [2023-10-13 13:29:49] Valid: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__occurrences_30800.csv (1148 lines)
[INFO] [2023-10-13 13:29:49] ...assocs (/app/public/data/moss_et_al_moss_/associations.txt)
[INFO] [2023-10-13 13:29:49] Valid: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__assocs_30802.csv (0 lines)
[INFO] [2023-10-13 13:29:49] ...measurements (/app/public/data/moss_et_al_moss_/measurements or facts.txt)
[INFO] [2023-10-13 13:29:49] Valid: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__measurements_30801.csv (1700 lines)
[STOP] [2023-10-13 13:29:49] validate_each_file
[START] [2023-10-13 13:29:49] convert_to_csv
[INFO] [2023-10-13 13:29:49] Looping over 8 formats...
[INFO] [2023-10-13 13:29:49] ...agents (/app/public/data/moss_et_al_moss_/agents.txt)
[CMD] [2023-10-13 13:29:49] /usr/bin/sort /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__agents_30799.csv > /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__agents_30799.csv_sorted
[INFO] [2023-10-13 13:29:49] Converted: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__agents_30799.csv (0 lines)
[INFO] [2023-10-13 13:29:49] ...refs (/app/public/data/moss_et_al_moss_/references.txt)
[CMD] [2023-10-13 13:29:49] /usr/bin/sort /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__refs_30798.csv > /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__refs_30798.csv_sorted
[INFO] [2023-10-13 13:29:49] Converted: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__refs_30798.csv (623 lines)
[INFO] [2023-10-13 13:29:49] ...nodes (/app/public/data/moss_et_al_moss_/taxa.txt)
[CMD] [2023-10-13 13:29:49] /usr/bin/sort /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__nodes_30796.csv > /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__nodes_30796.csv_sorted
[INFO] [2023-10-13 13:29:49] Converted: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__nodes_30796.csv (300 lines)
[INFO] [2023-10-13 13:29:49] ...media (/app/public/data/moss_et_al_moss_/media.txt)
[CMD] [2023-10-13 13:29:49] /usr/bin/sort /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__media_30795.csv > /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__media_30795.csv_sorted
[INFO] [2023-10-13 13:29:49] Converted: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__media_30795.csv (0 lines)
[INFO] [2023-10-13 13:29:49] ...vernaculars (/app/public/data/moss_et_al_moss_/common names.txt)
[CMD] [2023-10-13 13:29:49] /usr/bin/sort /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__vernaculars_30797.csv > /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__vernaculars_30797.csv_sorted
[INFO] [2023-10-13 13:29:49] Converted: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__vernaculars_30797.csv (0 lines)
[INFO] [2023-10-13 13:29:49] ...occurrences (/app/public/data/moss_et_al_moss_/occurrences.txt)
[CMD] [2023-10-13 13:29:49] /usr/bin/sort /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__occurrences_30800.csv > /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__occurrences_30800.csv_sorted
[INFO] [2023-10-13 13:29:50] Converted: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__occurrences_30800.csv (1148 lines)
[INFO] [2023-10-13 13:29:50] ...assocs (/app/public/data/moss_et_al_moss_/associations.txt)
[CMD] [2023-10-13 13:29:50] /usr/bin/sort /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__assocs_30802.csv > /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__assocs_30802.csv_sorted
[INFO] [2023-10-13 13:29:50] Converted: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__assocs_30802.csv (0 lines)
[INFO] [2023-10-13 13:29:50] ...measurements (/app/public/data/moss_et_al_moss_/measurements or facts.txt)
[CMD] [2023-10-13 13:29:50] /usr/bin/sort /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__measurements_30801.csv > /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__measurements_30801.csv_sorted
[INFO] [2023-10-13 13:29:50] Converted: /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__measurements_30801.csv (1700 lines)
[STOP] [2023-10-13 13:29:50] convert_to_csv
[START] [2023-10-13 13:29:50] calculate_delta
[INFO] [2023-10-13 13:29:50] Looping over 8 formats...
[INFO] [2023-10-13 13:29:50] ...agents (/app/public/data/moss_et_al_moss_/agents.txt)
[CMD] [2023-10-13 13:29:50] echo "0a" > /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__agents_30799.diff
[CMD] [2023-10-13 13:29:50] tail -n +1 /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__agents_30799.csv >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__agents_30799.diff
[CMD] [2023-10-13 13:29:50] echo "." >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__agents_30799.diff
[INFO] [2023-10-13 13:29:50] Created diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__agents_30799.diff (2 lines)
[INFO] [2023-10-13 13:29:50] ...refs (/app/public/data/moss_et_al_moss_/references.txt)
[CMD] [2023-10-13 13:29:50] echo "0a" > /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__refs_30798.diff
[CMD] [2023-10-13 13:29:50] tail -n +1 /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__refs_30798.csv >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__refs_30798.diff
[CMD] [2023-10-13 13:29:50] echo "." >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__refs_30798.diff
[INFO] [2023-10-13 13:29:50] Created diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__refs_30798.diff (625 lines)
[INFO] [2023-10-13 13:29:50] ...nodes (/app/public/data/moss_et_al_moss_/taxa.txt)
[CMD] [2023-10-13 13:29:50] echo "0a" > /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__nodes_30796.diff
[CMD] [2023-10-13 13:29:50] tail -n +1 /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__nodes_30796.csv >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__nodes_30796.diff
[CMD] [2023-10-13 13:29:50] echo "." >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__nodes_30796.diff
[INFO] [2023-10-13 13:29:50] Created diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__nodes_30796.diff (302 lines)
[INFO] [2023-10-13 13:29:50] ...media (/app/public/data/moss_et_al_moss_/media.txt)
[CMD] [2023-10-13 13:29:50] echo "0a" > /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__media_30795.diff
[CMD] [2023-10-13 13:29:51] tail -n +1 /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__media_30795.csv >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__media_30795.diff
[CMD] [2023-10-13 13:29:51] echo "." >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__media_30795.diff
[INFO] [2023-10-13 13:29:51] Created diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__media_30795.diff (2 lines)
[INFO] [2023-10-13 13:29:51] ...vernaculars (/app/public/data/moss_et_al_moss_/common names.txt)
[CMD] [2023-10-13 13:29:51] echo "0a" > /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__vernaculars_30797.diff
[CMD] [2023-10-13 13:29:51] tail -n +1 /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__vernaculars_30797.csv >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__vernaculars_30797.diff
[CMD] [2023-10-13 13:29:51] echo "." >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__vernaculars_30797.diff
[INFO] [2023-10-13 13:29:51] Created diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__vernaculars_30797.diff (2 lines)
[INFO] [2023-10-13 13:29:51] ...occurrences (/app/public/data/moss_et_al_moss_/occurrences.txt)
[CMD] [2023-10-13 13:29:51] echo "0a" > /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__occurrences_30800.diff
[CMD] [2023-10-13 13:29:51] tail -n +1 /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__occurrences_30800.csv >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__occurrences_30800.diff
[CMD] [2023-10-13 13:29:51] echo "." >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__occurrences_30800.diff
[INFO] [2023-10-13 13:29:51] Created diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__occurrences_30800.diff (1150 lines)
[INFO] [2023-10-13 13:29:51] ...assocs (/app/public/data/moss_et_al_moss_/associations.txt)
[CMD] [2023-10-13 13:29:51] echo "0a" > /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__assocs_30802.diff
[CMD] [2023-10-13 13:29:51] tail -n +1 /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__assocs_30802.csv >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__assocs_30802.diff
[CMD] [2023-10-13 13:29:51] echo "." >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__assocs_30802.diff
[INFO] [2023-10-13 13:29:51] Created diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__assocs_30802.diff (2 lines)
[INFO] [2023-10-13 13:29:51] ...measurements (/app/public/data/moss_et_al_moss_/measurements or facts.txt)
[CMD] [2023-10-13 13:29:51] echo "0a" > /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__measurements_30801.diff
[CMD] [2023-10-13 13:29:51] tail -n +1 /app/public/data/moss_et_al_moss_/converted_csv/moss_et_al_moss__measurements_30801.csv >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__measurements_30801.diff
[CMD] [2023-10-13 13:29:52] echo "." >> /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__measurements_30801.diff
[INFO] [2023-10-13 13:29:52] Created diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__measurements_30801.diff (1702 lines)
[STOP] [2023-10-13 13:29:52] calculate_delta
[START] [2023-10-13 13:29:52] parse_diff_and_store
[INFO] [2023-10-13 13:29:52] Handling diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__agents_30799.diff (2 lines)
[INFO] [2023-10-13 13:29:52] Loading agents diff file into memory (2 lines)...
[INFO] [2023-10-13 13:29:52] Handling diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__refs_30798.diff (625 lines)
[INFO] [2023-10-13 13:29:52] Loading refs diff file into memory (625 lines)...
[INFO] [2023-10-13 13:29:52] Storing 623 References (623/623/625)
[INFO] [2023-10-13 13:29:52] Handling diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__nodes_30796.diff (302 lines)
[INFO] [2023-10-13 13:29:52] Loading nodes diff file into memory (302 lines)...
[INFO] [2023-10-13 13:29:52] Storing 525 ScientificNames (1050/300/302)
[INFO] [2023-10-13 13:29:52] Storing 525 Nodes (1050/300/302)
[INFO] [2023-10-13 13:29:53] Handling diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__media_30795.diff (2 lines)
[INFO] [2023-10-13 13:29:53] Loading media diff file into memory (2 lines)...
[INFO] [2023-10-13 13:29:53] Handling diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__vernaculars_30797.diff (2 lines)
[INFO] [2023-10-13 13:29:53] Loading vernaculars diff file into memory (2 lines)...
[INFO] [2023-10-13 13:29:53] Handling diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__occurrences_30800.diff (1150 lines)
[INFO] [2023-10-13 13:29:53] Loading occurrences diff file into memory (1150 lines)...
[INFO] [2023-10-13 13:29:53] Storing 1148 Occurrences (4592/1148/1150)
[INFO] [2023-10-13 13:29:53] Storing 3444 OccurrenceMetadata (4592/1148/1150)
[INFO] [2023-10-13 13:29:54] Handling diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__assocs_30802.diff (2 lines)
[INFO] [2023-10-13 13:29:54] Loading assocs diff file into memory (2 lines)...
[INFO] [2023-10-13 13:29:54] Handling diff: /app/public/data/moss_et_al_moss_/diff/moss_et_al_moss__measurements_30801.diff (1702 lines)
[INFO] [2023-10-13 13:29:54] Loading measurements diff file into memory (1702 lines)...
[INFO] [2023-10-13 13:29:55] Storing 1084 TraitsReferences (4151/1700/1702)
[INFO] [2023-10-13 13:29:55] Storing 1084 Traits (4151/1700/1702)
[INFO] [2023-10-13 13:29:55] Storing 1367 MetaTraits (4151/1700/1702)
[INFO] [2023-10-13 13:29:55] Storing 616 OccurrenceMetadata (4151/1700/1702)
[STOP] [2023-10-13 13:29:55] parse_diff_and_store
[START] [2023-10-13 13:29:55] resolve_keys
[2023-10-13 13:29:55] Resolving downloaded urls (this is not actually downloading them yet)
[INFO] [2023-10-13 13:30:03] Occurrences to nodes (through scientific_names)...
[INFO] [2023-10-13 13:30:03] traits to occurrences...
[INFO] [2023-10-13 13:30:03] traits to nodes (through occurrences)...
[INFO] [2023-10-13 13:30:03] Traits to sex term...
[INFO] [2023-10-13 13:30:03] Traits to lifestage term...
[INFO] [2023-10-13 13:30:03] MetaTraits to traits...
[INFO] [2023-10-13 13:30:04] MetaTraits (simple, measurement row refers to parent) to traits...
[INFO] [2023-10-13 13:30:04] Assocs to occurrences...
[INFO] [2023-10-13 13:30:04] Assocs to nodes...
[INFO] [2023-10-13 13:30:04] Assoc to sex term...
[INFO] [2023-10-13 13:30:04] Assoc to lifestage term...
[INFO] [2023-10-13 13:30:04] MetaAssoc to assocs...
[STOP] [2023-10-13 13:30:04] resolve_keys
[START] [2023-10-13 13:30:04] hold_for_later_1
[STOP] [2023-10-13 13:30:04] hold_for_later_1
[START] [2023-10-13 13:30:04] hold_for_later_2
[STOP] [2023-10-13 13:30:04] hold_for_later_2
[START] [2023-10-13 13:30:04] resolve_missing_parents
[STOP] [2023-10-13 13:30:04] resolve_missing_parents
[START] [2023-10-13 13:30:04] rebuild_nodes
[START] [2023-10-13 13:30:04] Flattener#flatten
[START] [2023-10-13 13:30:04] Flattener#study_resource
[START] [2023-10-13 13:30:04] Flattener#build_ancestry
[STOP] [2023-10-13 13:30:04] Flattener#build_ancestry
[INFO] [2023-10-13 13:30:04] 525 ancestry keys
[START] [2023-10-13 13:30:04] build_node_ancestors
[INFO] [2023-10-13 13:30:04] old ancestors deleted.
[STOP] [2023-10-13 13:30:04] build_node_ancestors
[START] [2023-10-13 13:30:04] Flattener#propagate_ancestor_ids
[STOP] [2023-10-13 13:30:04] Flattener#propagate_ancestor_ids
[STOP] [2023-10-13 13:30:04] Flattener#flatten
[STOP] [2023-10-13 13:30:04] rebuild_nodes
[START] [2023-10-13 13:30:04] resolve_missing_media_owners
[STOP] [2023-10-13 13:30:04] resolve_missing_media_owners
[START] [2023-10-13 13:30:04] sanitize_media_verbatims
[STOP] [2023-10-13 13:30:04] sanitize_media_verbatims
[START] [2023-10-13 13:30:04] queue_downloads
[STOP] [2023-10-13 13:30:04] queue_downloads
[START] [2023-10-13 13:30:04] parse_names
[WARN] [2023-10-13 13:30:04] I see 525 names which still need to be parsed.
[WARN] [2023-10-13 13:30:04] Names to parse: 525 formatted: 525 learned: 516 parsed: 525
[STOP] [2023-10-13 13:30:05] parse_names
[START] [2023-10-13 13:30:05] denormalize_canonical_names_to_nodes
[STOP] [2023-10-13 13:30:05] denormalize_canonical_names_to_nodes
[START] [2023-10-13 13:30:05] match_nodes
[START] [2023-10-13 13:30:05] map_all_nodes_to_pages
[STOP] [2023-10-13 13:30:23] map_all_nodes_to_pages
[INFO] [2023-10-13 13:30:23] 31 Unmatched nodes (of 525)! That's too many to output. Full list in /app/public/data/moss_et_al_moss_/unmatched_nodes.txt ; First 10: Canonical: Tridacna dersa; Node#137179588; ResourceID: Tridacna dersa; Canonical: Macoma balthica; Node#137179365; ResourceID: Macoma balthica; Canonical: Anadara nobilis; Node#137179130; ResourceID: Anadara nobilis; Canonical: Chlamys tehuelcha; Node#137179213; ResourceID: Chlamys tehuelcha; Canonical: Pecten fumatus; Node#137179455; ResourceID: Pecten fumatus; Canonical: Chionista fulctifraga; Node#137179210; ResourceID: Chionista fulctifraga; Canonical: Dosinia; Node#137179277; ResourceID: Metazoa/Mollusca/Bivalvia/Venerida/Veneridae/Dosinia; Canonical: Dosinia elegans; Node#137179280; ResourceID: Dosinia elegans; Canonical: Dosinia japonicum; Node#137179284; ResourceID: Dosinia japonicum; Canonical: Katelysia opima; Node#137179327; ResourceID: Katelysia opima
[START] [2023-10-13 13:30:23] update_nodes
[STOP] [2023-10-13 13:30:23] update_nodes
[STOP] [2023-10-13 13:30:23] match_nodes
[START] [2023-10-13 13:30:23] reindex_search
[STOP] [2023-10-13 13:30:24] reindex_search
[START] [2023-10-13 13:30:24] normalize_units
[STOP] [2023-10-13 13:30:28] normalize_units
[START] [2023-10-13 13:30:28] calculate_statistics
[INFO] [2023-10-13 13:30:28] Duplicate page_id count: 0
[STOP] [2023-10-13 13:30:28] calculate_statistics
[START] [2023-10-13 13:30:28] complete_harvest_instance
[START] [2023-10-13 13:30:28] overall_tsv_creation
[INFO] [2023-10-13 13:30:28] Exporting 525 nodes as TSV in batches of 10000...
[INFO] [2023-10-13 13:30:28] Processing group of 525 in 1 batches of 10000
[INFO] [2023-10-13 13:30:29] 1084 Traits (unfiltered) and 0 associations...
[INFO] [2023-10-13 13:30:29] Building Traits map for 525 nodes (this can take a while)...
[INFO] [2023-10-13 13:30:30] Mapped 1084 traits (1367 meta) for 525 nodes.
[INFO] [2023-10-13 13:30:30] Building Associations map (this can take a while)...
[INFO] [2023-10-13 13:30:30] Done. 0 assocs mapped (0 meta).
[INFO] [2023-10-13 13:30:30] Adding 1084 traits...
[INFO] [2023-10-13 13:30:30] 4332 metadata added.
[INFO] [2023-10-13 13:30:30] Adding 0 assocs...
[INFO] [2023-10-13 13:30:30] 0 metadata added.
[INFO] [2023-10-13 13:31:14] Processed 525/525 nodes
[INFO] [2023-10-13 13:31:14] Average Time: 45.83
[INFO] [2023-10-13 13:31:14] Total Time: 47s
[STOP] [2023-10-13 13:31:14] overall_tsv_creation
[INFO] [2023-10-13 13:31:14] Done. Check your files:
[INFO] [2023-10-13 13:31:14] (522 lines) /app/public/data/moss_et_al_moss_/publish_nodes.tsv
[INFO] [2023-10-13 13:31:15] (2820 lines) /app/public/data/moss_et_al_moss_/publish_node_ancestors.tsv
[INFO] [2023-10-13 13:31:15] (525 lines) /app/public/data/moss_et_al_moss_/publish_scientific_names.tsv
[INFO] [2023-10-13 13:31:15] (1085 lines) /app/public/data/moss_et_al_moss_/publish_traits.tsv
[INFO] [2023-10-13 13:31:15] (4333 lines) /app/public/data/moss_et_al_moss_/publish_metadata.tsv
[STOP] [2023-10-13 13:31:15] complete_harvest_instance
[START] [2023-10-13 13:31:15] completed
[STOP] [2023-10-13 13:31:15] completed
[STOP] [2023-10-13 13:31:15] logged process, took 86.32

Latest Process