Harvest for Morgan Ernest 2003 Created 13 Oct 12:57

Harvesting Log

[INFO] [2023-10-13 12:57:30] Created harvest instance #4446
[STOP] [2023-10-13 12:57:30] create_harvest_instance
[START] [2023-10-13 12:57:30] fetch_files
[STOP] [2023-10-13 12:57:30] fetch_files
[START] [2023-10-13 12:57:30] validate_each_file
[INFO] [2023-10-13 12:57:30] Looping over 8 formats...
[INFO] [2023-10-13 12:57:30] ...agents (/app/public/data/morgan_ernest_mo/agents.txt)
[INFO] [2023-10-13 12:57:30] Valid: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_agents_30779.csv (0 lines)
[INFO] [2023-10-13 12:57:30] ...refs (/app/public/data/morgan_ernest_mo/references.txt)
[INFO] [2023-10-13 12:57:30] Valid: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_refs_30778.csv (29 lines)
[INFO] [2023-10-13 12:57:30] ...nodes (/app/public/data/morgan_ernest_mo/taxa.txt)
[INFO] [2023-10-13 12:57:30] Valid: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_nodes_30776.csv (1440 lines)
[INFO] [2023-10-13 12:57:30] ...media (/app/public/data/morgan_ernest_mo/media.txt)
[INFO] [2023-10-13 12:57:30] Valid: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_media_30775.csv (0 lines)
[INFO] [2023-10-13 12:57:30] ...vernaculars (/app/public/data/morgan_ernest_mo/common names.txt)
[INFO] [2023-10-13 12:57:30] Valid: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_vernaculars_30777.csv (0 lines)
[INFO] [2023-10-13 12:57:30] ...occurrences (/app/public/data/morgan_ernest_mo/occurrences.tsv)
[INFO] [2023-10-13 12:57:30] Valid: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_occurrences_30780.csv (4041 lines)
[INFO] [2023-10-13 12:57:30] ...assocs (/app/public/data/morgan_ernest_mo/associations.txt)
[INFO] [2023-10-13 12:57:30] Valid: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_assocs_30782.csv (0 lines)
[INFO] [2023-10-13 12:57:30] ...measurements (/app/public/data/morgan_ernest_mo/measurements_or_facts.tsv)
[INFO] [2023-10-13 12:57:31] Valid: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_measurements_30781.csv (9338 lines)
[STOP] [2023-10-13 12:57:31] validate_each_file
[START] [2023-10-13 12:57:31] convert_to_csv
[INFO] [2023-10-13 12:57:31] Looping over 8 formats...
[INFO] [2023-10-13 12:57:31] ...agents (/app/public/data/morgan_ernest_mo/agents.txt)
[CMD] [2023-10-13 12:57:31] /usr/bin/sort /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_agents_30779.csv > /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_agents_30779.csv_sorted
[INFO] [2023-10-13 12:57:31] Converted: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_agents_30779.csv (0 lines)
[INFO] [2023-10-13 12:57:31] ...refs (/app/public/data/morgan_ernest_mo/references.txt)
[CMD] [2023-10-13 12:57:31] /usr/bin/sort /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_refs_30778.csv > /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_refs_30778.csv_sorted
[INFO] [2023-10-13 12:57:31] Converted: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_refs_30778.csv (29 lines)
[INFO] [2023-10-13 12:57:31] ...nodes (/app/public/data/morgan_ernest_mo/taxa.txt)
[CMD] [2023-10-13 12:57:31] /usr/bin/sort /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_nodes_30776.csv > /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_nodes_30776.csv_sorted
[INFO] [2023-10-13 12:57:31] Converted: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_nodes_30776.csv (1440 lines)
[INFO] [2023-10-13 12:57:31] ...media (/app/public/data/morgan_ernest_mo/media.txt)
[CMD] [2023-10-13 12:57:31] /usr/bin/sort /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_media_30775.csv > /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_media_30775.csv_sorted
[INFO] [2023-10-13 12:57:31] Converted: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_media_30775.csv (0 lines)
[INFO] [2023-10-13 12:57:31] ...vernaculars (/app/public/data/morgan_ernest_mo/common names.txt)
[CMD] [2023-10-13 12:57:31] /usr/bin/sort /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_vernaculars_30777.csv > /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_vernaculars_30777.csv_sorted
[INFO] [2023-10-13 12:57:31] Converted: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_vernaculars_30777.csv (0 lines)
[INFO] [2023-10-13 12:57:31] ...occurrences (/app/public/data/morgan_ernest_mo/occurrences.tsv)
[CMD] [2023-10-13 12:57:31] /usr/bin/sort /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_occurrences_30780.csv > /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_occurrences_30780.csv_sorted
[INFO] [2023-10-13 12:57:31] Converted: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_occurrences_30780.csv (4041 lines)
[INFO] [2023-10-13 12:57:31] ...assocs (/app/public/data/morgan_ernest_mo/associations.txt)
[CMD] [2023-10-13 12:57:31] /usr/bin/sort /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_assocs_30782.csv > /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_assocs_30782.csv_sorted
[INFO] [2023-10-13 12:57:31] Converted: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_assocs_30782.csv (0 lines)
[INFO] [2023-10-13 12:57:31] ...measurements (/app/public/data/morgan_ernest_mo/measurements_or_facts.tsv)
[CMD] [2023-10-13 12:57:31] /usr/bin/sort /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_measurements_30781.csv > /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_measurements_30781.csv_sorted
[INFO] [2023-10-13 12:57:31] Converted: /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_measurements_30781.csv (9338 lines)
[STOP] [2023-10-13 12:57:31] convert_to_csv
[START] [2023-10-13 12:57:31] calculate_delta
[INFO] [2023-10-13 12:57:31] Looping over 8 formats...
[INFO] [2023-10-13 12:57:31] ...agents (/app/public/data/morgan_ernest_mo/agents.txt)
[CMD] [2023-10-13 12:57:31] echo "0a" > /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_agents_30779.diff
[CMD] [2023-10-13 12:57:32] tail -n +1 /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_agents_30779.csv >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_agents_30779.diff
[CMD] [2023-10-13 12:57:32] echo "." >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_agents_30779.diff
[INFO] [2023-10-13 12:57:32] Created diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_agents_30779.diff (2 lines)
[INFO] [2023-10-13 12:57:32] ...refs (/app/public/data/morgan_ernest_mo/references.txt)
[CMD] [2023-10-13 12:57:32] echo "0a" > /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_refs_30778.diff
[CMD] [2023-10-13 12:57:32] tail -n +1 /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_refs_30778.csv >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_refs_30778.diff
[CMD] [2023-10-13 12:57:32] echo "." >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_refs_30778.diff
[INFO] [2023-10-13 12:57:32] Created diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_refs_30778.diff (31 lines)
[INFO] [2023-10-13 12:57:32] ...nodes (/app/public/data/morgan_ernest_mo/taxa.txt)
[CMD] [2023-10-13 12:57:32] echo "0a" > /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_nodes_30776.diff
[CMD] [2023-10-13 12:57:32] tail -n +1 /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_nodes_30776.csv >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_nodes_30776.diff
[CMD] [2023-10-13 12:57:32] echo "." >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_nodes_30776.diff
[INFO] [2023-10-13 12:57:32] Created diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_nodes_30776.diff (1442 lines)
[INFO] [2023-10-13 12:57:32] ...media (/app/public/data/morgan_ernest_mo/media.txt)
[CMD] [2023-10-13 12:57:32] echo "0a" > /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_media_30775.diff
[CMD] [2023-10-13 12:57:32] tail -n +1 /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_media_30775.csv >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_media_30775.diff
[CMD] [2023-10-13 12:57:32] echo "." >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_media_30775.diff
[INFO] [2023-10-13 12:57:32] Created diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_media_30775.diff (2 lines)
[INFO] [2023-10-13 12:57:32] ...vernaculars (/app/public/data/morgan_ernest_mo/common names.txt)
[CMD] [2023-10-13 12:57:32] echo "0a" > /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_vernaculars_30777.diff
[CMD] [2023-10-13 12:57:32] tail -n +1 /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_vernaculars_30777.csv >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_vernaculars_30777.diff
[CMD] [2023-10-13 12:57:32] echo "." >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_vernaculars_30777.diff
[INFO] [2023-10-13 12:57:33] Created diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_vernaculars_30777.diff (2 lines)
[INFO] [2023-10-13 12:57:33] ...occurrences (/app/public/data/morgan_ernest_mo/occurrences.tsv)
[CMD] [2023-10-13 12:57:33] echo "0a" > /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_occurrences_30780.diff
[CMD] [2023-10-13 12:57:33] tail -n +1 /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_occurrences_30780.csv >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_occurrences_30780.diff
[CMD] [2023-10-13 12:57:33] echo "." >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_occurrences_30780.diff
[INFO] [2023-10-13 12:57:33] Created diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_occurrences_30780.diff (4043 lines)
[INFO] [2023-10-13 12:57:33] ...assocs (/app/public/data/morgan_ernest_mo/associations.txt)
[CMD] [2023-10-13 12:57:33] echo "0a" > /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_assocs_30782.diff
[CMD] [2023-10-13 12:57:33] tail -n +1 /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_assocs_30782.csv >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_assocs_30782.diff
[CMD] [2023-10-13 12:57:33] echo "." >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_assocs_30782.diff
[INFO] [2023-10-13 12:57:33] Created diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_assocs_30782.diff (2 lines)
[INFO] [2023-10-13 12:57:33] ...measurements (/app/public/data/morgan_ernest_mo/measurements_or_facts.tsv)
[CMD] [2023-10-13 12:57:33] echo "0a" > /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_measurements_30781.diff
[CMD] [2023-10-13 12:57:33] tail -n +1 /app/public/data/morgan_ernest_mo/converted_csv/morgan_ernest_mo_measurements_30781.csv >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_measurements_30781.diff
[CMD] [2023-10-13 12:57:33] echo "." >> /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_measurements_30781.diff
[INFO] [2023-10-13 12:57:33] Created diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_measurements_30781.diff (9340 lines)
[STOP] [2023-10-13 12:57:33] calculate_delta
[START] [2023-10-13 12:57:33] parse_diff_and_store
[INFO] [2023-10-13 12:57:33] Handling diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_agents_30779.diff (2 lines)
[INFO] [2023-10-13 12:57:33] Loading agents diff file into memory (2 lines)...
[INFO] [2023-10-13 12:57:33] Handling diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_refs_30778.diff (31 lines)
[INFO] [2023-10-13 12:57:33] Loading refs diff file into memory (31 lines)...
[INFO] [2023-10-13 12:57:33] Storing 29 References (29/29/31)
[INFO] [2023-10-13 12:57:33] Handling diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_nodes_30776.diff (1442 lines)
[INFO] [2023-10-13 12:57:34] Loading nodes diff file into memory (1442 lines)...
[WARN] [2023-10-13 12:57:34] Filtered Scientific Name `Uromys  caudimaculatus` to `Uromys caudimaculatus`
[INFO] [2023-10-13 12:57:34] Storing 2175 ScientificNames (4350/1440/1442)
[INFO] [2023-10-13 12:57:35] Storing 2175 Nodes (4350/1440/1442)
[INFO] [2023-10-13 12:57:35] Handling diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_media_30775.diff (2 lines)
[INFO] [2023-10-13 12:57:35] Loading media diff file into memory (2 lines)...
[INFO] [2023-10-13 12:57:35] Handling diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_vernaculars_30777.diff (2 lines)
[INFO] [2023-10-13 12:57:36] Loading vernaculars diff file into memory (2 lines)...
[INFO] [2023-10-13 12:57:36] Handling diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_occurrences_30780.diff (4043 lines)
[INFO] [2023-10-13 12:57:36] Loading occurrences diff file into memory (4043 lines)...
[INFO] [2023-10-13 12:57:37] Storing 4041 Occurrences (7997/4041/4043)
[INFO] [2023-10-13 12:57:37] Storing 3956 OccurrenceMetadata (7997/4041/4043)
[INFO] [2023-10-13 12:57:38] Handling diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_assocs_30782.diff (2 lines)
[INFO] [2023-10-13 12:57:38] Loading assocs diff file into memory (2 lines)...
[INFO] [2023-10-13 12:57:38] Handling diff: /app/public/data/morgan_ernest_mo/diff/morgan_ernest_mo_measurements_30781.diff (9340 lines)
[INFO] [2023-10-13 12:57:38] Loading measurements diff file into memory (9340 lines)...
[INFO] [2023-10-13 12:57:44] Storing 9338 Traits (56498/9338/9340)
[INFO] [2023-10-13 12:57:47] Storing 31194 TraitsReferences (56498/9338/9340)
[INFO] [2023-10-13 12:57:50] Storing 15966 MetaTraits (56498/9338/9340)
[STOP] [2023-10-13 12:57:52] parse_diff_and_store
[START] [2023-10-13 12:57:52] resolve_keys
[2023-10-13 12:57:53] Resolving downloaded urls (this is not actually downloading them yet)
[INFO] [2023-10-13 12:58:00] Occurrences to nodes (through scientific_names)...
[INFO] [2023-10-13 12:58:01] traits to occurrences...
[INFO] [2023-10-13 12:58:01] traits to nodes (through occurrences)...
[INFO] [2023-10-13 12:58:01] Traits to sex term...
[INFO] [2023-10-13 12:58:01] Traits to lifestage term...
[INFO] [2023-10-13 12:58:01] MetaTraits to traits...
[INFO] [2023-10-13 12:58:02] MetaTraits (simple, measurement row refers to parent) to traits...
[INFO] [2023-10-13 12:58:03] Assocs to occurrences...
[INFO] [2023-10-13 12:58:03] Assocs to nodes...
[INFO] [2023-10-13 12:58:03] Assoc to sex term...
[INFO] [2023-10-13 12:58:03] Assoc to lifestage term...
[INFO] [2023-10-13 12:58:03] MetaAssoc to assocs...
[STOP] [2023-10-13 12:58:03] resolve_keys
[START] [2023-10-13 12:58:03] hold_for_later_1
[STOP] [2023-10-13 12:58:03] hold_for_later_1
[START] [2023-10-13 12:58:03] hold_for_later_2
[STOP] [2023-10-13 12:58:03] hold_for_later_2
[START] [2023-10-13 12:58:03] resolve_missing_parents
[STOP] [2023-10-13 12:58:03] resolve_missing_parents
[START] [2023-10-13 12:58:03] rebuild_nodes
[START] [2023-10-13 12:58:03] Flattener#flatten
[START] [2023-10-13 12:58:03] Flattener#study_resource
[START] [2023-10-13 12:58:03] Flattener#build_ancestry
[STOP] [2023-10-13 12:58:03] Flattener#build_ancestry
[INFO] [2023-10-13 12:58:03] 2175 ancestry keys
[START] [2023-10-13 12:58:03] build_node_ancestors
[INFO] [2023-10-13 12:58:03] old ancestors deleted.
[STOP] [2023-10-13 12:58:03] build_node_ancestors
[START] [2023-10-13 12:58:04] Flattener#propagate_ancestor_ids
[STOP] [2023-10-13 12:58:04] Flattener#propagate_ancestor_ids
[STOP] [2023-10-13 12:58:04] Flattener#flatten
[STOP] [2023-10-13 12:58:04] rebuild_nodes
[START] [2023-10-13 12:58:04] resolve_missing_media_owners
[STOP] [2023-10-13 12:58:04] resolve_missing_media_owners
[START] [2023-10-13 12:58:04] sanitize_media_verbatims
[STOP] [2023-10-13 12:58:04] sanitize_media_verbatims
[START] [2023-10-13 12:58:04] queue_downloads
[STOP] [2023-10-13 12:58:04] queue_downloads
[START] [2023-10-13 12:58:04] parse_names
[WARN] [2023-10-13 12:58:04] I see 2175 names which still need to be parsed.
[WARN] [2023-10-13 12:58:04] Names to parse: 2175 formatted: 2175 learned: 2171 parsed: 2175
[STOP] [2023-10-13 12:58:06] parse_names
[START] [2023-10-13 12:58:06] denormalize_canonical_names_to_nodes
[STOP] [2023-10-13 12:58:06] denormalize_canonical_names_to_nodes
[START] [2023-10-13 12:58:06] match_nodes
[START] [2023-10-13 12:58:06] map_all_nodes_to_pages
[STOP] [2023-10-13 12:58:33] map_all_nodes_to_pages
[INFO] [2023-10-13 12:58:33] 27 Unmatched nodes (of 2175)! That's too many to output. Full list in /app/public/data/morgan_ernest_mo/unmatched_nodes.txt ; First 10: Canonical: Abrocoma bennetti; Node#137166011; ResourceID: Abrocoma_bennetti; Canonical: Myomys; Node#137167296; ResourceID: Rodentia/Muridae/Myomys; Canonical: Myomys fumatus; Node#137167299; ResourceID: Myomys_fumatus; Canonical: Pseudomys praeconis; Node#137167726; ResourceID: Pseudomys_praeconis; Canonical: Spalax; Node#137167894; ResourceID: Rodentia/Muridae/Spalax; Canonical: Salpingotus; Node#137167823; ResourceID: Rodentia/Dipodidae/Salpingotus; Canonical: Spermophilus nayaritensis; Node#137167918; ResourceID: Spermophilus_nayaritensis; Canonical: Xerus; Node#137168162; ResourceID: Rodentia/Sciuridae/Xerus; Canonical: Liomys; Node#137167042; ResourceID: Rodentia/Heteromyidae/Liomys; Canonical: Myocastoridae; Node#137167293; ResourceID: Rodentia/Myocastoridae
[START] [2023-10-13 12:58:33] update_nodes
[STOP] [2023-10-13 12:58:34] update_nodes
[STOP] [2023-10-13 12:58:34] match_nodes
[START] [2023-10-13 12:58:34] reindex_search
[STOP] [2023-10-13 12:58:35] reindex_search
[START] [2023-10-13 12:58:35] normalize_units
[STOP] [2023-10-13 12:58:56] normalize_units
[START] [2023-10-13 12:58:56] calculate_statistics
[INFO] [2023-10-13 12:59:05] Duplicate page_id count: 0
[STOP] [2023-10-13 12:59:05] calculate_statistics
[START] [2023-10-13 12:59:05] complete_harvest_instance
[START] [2023-10-13 12:59:05] overall_tsv_creation
[INFO] [2023-10-13 12:59:05] Exporting 2175 nodes as TSV in batches of 10000...
[INFO] [2023-10-13 12:59:05] Processing group of 2175 in 1 batches of 10000
[INFO] [2023-10-13 12:59:09] 7983 Traits (unfiltered) and 0 associations...
[INFO] [2023-10-13 12:59:09] Building Traits map for 2175 nodes (this can take a while)...
[INFO] [2023-10-13 12:59:13] Mapped 7983 traits (15966 meta) for 2175 nodes.
[INFO] [2023-10-13 12:59:13] Building Associations map (this can take a while)...
[INFO] [2023-10-13 12:59:13] Done. 0 assocs mapped (0 meta).
[INFO] [2023-10-13 12:59:13] Adding 7983 traits...
[INFO] [2023-10-13 12:59:17] 31194 metadata added.
[INFO] [2023-10-13 12:59:17] Adding 0 assocs...
[INFO] [2023-10-13 12:59:17] 0 metadata added.
[INFO] [2023-10-13 13:00:02] Processed 2175/2175 nodes
[INFO] [2023-10-13 13:00:02] Average Time: 56.21
[INFO] [2023-10-13 13:00:02] Total Time: 57s
[STOP] [2023-10-13 13:00:02] overall_tsv_creation
[INFO] [2023-10-13 13:00:02] Done. Check your files:
[INFO] [2023-10-13 13:00:02] (2175 lines) /app/public/data/morgan_ernest_mo/publish_nodes.tsv
[INFO] [2023-10-13 13:00:02] (5657 lines) /app/public/data/morgan_ernest_mo/publish_node_ancestors.tsv
[INFO] [2023-10-13 13:00:02] (2175 lines) /app/public/data/morgan_ernest_mo/publish_scientific_names.tsv
[INFO] [2023-10-13 13:00:02] (7984 lines) /app/public/data/morgan_ernest_mo/publish_traits.tsv
[INFO] [2023-10-13 13:00:02] (31195 lines) /app/public/data/morgan_ernest_mo/publish_metadata.tsv
[STOP] [2023-10-13 13:00:02] complete_harvest_instance
[START] [2023-10-13 13:00:02] completed
[STOP] [2023-10-13 13:00:02] completed
[STOP] [2023-10-13 13:00:02] logged process, took 152.62

Latest Process

13 Oct 12:57 EXITED currently processing 0