Harvest for
O Brien et al
Created
13 Oct 11:23
Stage:
completed
Fetched:
13 Oct 11:23
Validated:
13 Oct 11:23
Deltas Created
13 Oct 11:23
Units Normalized:
13 Oct 11:23
Ancestry Built:
13 Oct 11:23
Nodes Matched:
13 Oct 11:23
Names Parsed:
13 Oct 11:23
New Models Stored:
13 Oct 11:23
Indexed:
13 Oct 11:23
Completed:
13 Oct 11:24
Time to Harvest:
less than a minute
Harvesting Log
(206 lines)
[INFO] [2023-10-13 11:23:09] Created harvest instance #4431
[STOP] [2023-10-13 11:23:09] create_harvest_instance
[START] [2023-10-13 11:23:09] fetch_files
[STOP] [2023-10-13 11:23:09] fetch_files
[START] [2023-10-13 11:23:09] validate_each_file
[INFO] [2023-10-13 11:23:09] Looping over 8 formats...
[INFO] [2023-10-13 11:23:09] ...agents (/app/public/data/O_Brien_et_al/agents.txt)
[INFO] [2023-10-13 11:23:09] Valid: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_agents_30693.csv (0 lines)
[INFO] [2023-10-13 11:23:09] ...refs (/app/public/data/O_Brien_et_al/references.txt)
[INFO] [2023-10-13 11:23:09] Valid: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_refs_30692.csv (28 lines)
[INFO] [2023-10-13 11:23:09] ...nodes (/app/public/data/O_Brien_et_al/taxa.txt)
[INFO] [2023-10-13 11:23:09] Valid: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_nodes_30690.csv (192 lines)
[INFO] [2023-10-13 11:23:09] ...media (/app/public/data/O_Brien_et_al/media.txt)
[INFO] [2023-10-13 11:23:09] Valid: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_media_30689.csv (0 lines)
[INFO] [2023-10-13 11:23:09] ...vernaculars (/app/public/data/O_Brien_et_al/common names.txt)
[INFO] [2023-10-13 11:23:09] Valid: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_vernaculars_30691.csv (0 lines)
[INFO] [2023-10-13 11:23:09] ...occurrences (/app/public/data/O_Brien_et_al/occurrences.txt)
[INFO] [2023-10-13 11:23:09] Valid: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_occurrences_30694.csv (192 lines)
[INFO] [2023-10-13 11:23:09] ...assocs (/app/public/data/O_Brien_et_al/associations.txt)
[INFO] [2023-10-13 11:23:09] Valid: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_assocs_30696.csv (0 lines)
[INFO] [2023-10-13 11:23:09] ...measurements (/app/public/data/O_Brien_et_al/measurements or facts.txt)
[INFO] [2023-10-13 11:23:10] Valid: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_measurements_30695.csv (3273 lines)
[STOP] [2023-10-13 11:23:10] validate_each_file
[START] [2023-10-13 11:23:10] convert_to_csv
[INFO] [2023-10-13 11:23:10] Looping over 8 formats...
[INFO] [2023-10-13 11:23:10] ...agents (/app/public/data/O_Brien_et_al/agents.txt)
[CMD] [2023-10-13 11:23:10] /usr/bin/sort /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_agents_30693.csv > /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_agents_30693.csv_sorted
[INFO] [2023-10-13 11:23:10] Converted: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_agents_30693.csv (0 lines)
[INFO] [2023-10-13 11:23:10] ...refs (/app/public/data/O_Brien_et_al/references.txt)
[CMD] [2023-10-13 11:23:10] /usr/bin/sort /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_refs_30692.csv > /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_refs_30692.csv_sorted
[INFO] [2023-10-13 11:23:10] Converted: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_refs_30692.csv (28 lines)
[INFO] [2023-10-13 11:23:10] ...nodes (/app/public/data/O_Brien_et_al/taxa.txt)
[CMD] [2023-10-13 11:23:10] /usr/bin/sort /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_nodes_30690.csv > /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_nodes_30690.csv_sorted
[INFO] [2023-10-13 11:23:10] Converted: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_nodes_30690.csv (192 lines)
[INFO] [2023-10-13 11:23:10] ...media (/app/public/data/O_Brien_et_al/media.txt)
[CMD] [2023-10-13 11:23:10] /usr/bin/sort /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_media_30689.csv > /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_media_30689.csv_sorted
[INFO] [2023-10-13 11:23:10] Converted: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_media_30689.csv (0 lines)
[INFO] [2023-10-13 11:23:10] ...vernaculars (/app/public/data/O_Brien_et_al/common names.txt)
[CMD] [2023-10-13 11:23:10] /usr/bin/sort /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_vernaculars_30691.csv > /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_vernaculars_30691.csv_sorted
[INFO] [2023-10-13 11:23:10] Converted: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_vernaculars_30691.csv (0 lines)
[INFO] [2023-10-13 11:23:10] ...occurrences (/app/public/data/O_Brien_et_al/occurrences.txt)
[CMD] [2023-10-13 11:23:10] /usr/bin/sort /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_occurrences_30694.csv > /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_occurrences_30694.csv_sorted
[INFO] [2023-10-13 11:23:10] Converted: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_occurrences_30694.csv (192 lines)
[INFO] [2023-10-13 11:23:10] ...assocs (/app/public/data/O_Brien_et_al/associations.txt)
[CMD] [2023-10-13 11:23:10] /usr/bin/sort /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_assocs_30696.csv > /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_assocs_30696.csv_sorted
[INFO] [2023-10-13 11:23:10] Converted: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_assocs_30696.csv (0 lines)
[INFO] [2023-10-13 11:23:10] ...measurements (/app/public/data/O_Brien_et_al/measurements or facts.txt)
[CMD] [2023-10-13 11:23:10] /usr/bin/sort /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_measurements_30695.csv > /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_measurements_30695.csv_sorted
[INFO] [2023-10-13 11:23:11] Converted: /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_measurements_30695.csv (3273 lines)
[STOP] [2023-10-13 11:23:11] convert_to_csv
[START] [2023-10-13 11:23:11] calculate_delta
[INFO] [2023-10-13 11:23:11] Looping over 8 formats...
[INFO] [2023-10-13 11:23:11] ...agents (/app/public/data/O_Brien_et_al/agents.txt)
[CMD] [2023-10-13 11:23:11] echo "0a" > /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_agents_30693.diff
[CMD] [2023-10-13 11:23:11] tail -n +1 /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_agents_30693.csv >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_agents_30693.diff
[CMD] [2023-10-13 11:23:11] echo "." >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_agents_30693.diff
[INFO] [2023-10-13 11:23:11] Created diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_agents_30693.diff (2 lines)
[INFO] [2023-10-13 11:23:11] ...refs (/app/public/data/O_Brien_et_al/references.txt)
[CMD] [2023-10-13 11:23:11] echo "0a" > /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_refs_30692.diff
[CMD] [2023-10-13 11:23:11] tail -n +1 /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_refs_30692.csv >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_refs_30692.diff
[CMD] [2023-10-13 11:23:11] echo "." >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_refs_30692.diff
[INFO] [2023-10-13 11:23:11] Created diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_refs_30692.diff (30 lines)
[INFO] [2023-10-13 11:23:11] ...nodes (/app/public/data/O_Brien_et_al/taxa.txt)
[CMD] [2023-10-13 11:23:11] echo "0a" > /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_nodes_30690.diff
[CMD] [2023-10-13 11:23:11] tail -n +1 /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_nodes_30690.csv >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_nodes_30690.diff
[CMD] [2023-10-13 11:23:11] echo "." >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_nodes_30690.diff
[INFO] [2023-10-13 11:23:11] Created diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_nodes_30690.diff (194 lines)
[INFO] [2023-10-13 11:23:11] ...media (/app/public/data/O_Brien_et_al/media.txt)
[CMD] [2023-10-13 11:23:11] echo "0a" > /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_media_30689.diff
[CMD] [2023-10-13 11:23:11] tail -n +1 /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_media_30689.csv >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_media_30689.diff
[CMD] [2023-10-13 11:23:11] echo "." >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_media_30689.diff
[INFO] [2023-10-13 11:23:11] Created diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_media_30689.diff (2 lines)
[INFO] [2023-10-13 11:23:11] ...vernaculars (/app/public/data/O_Brien_et_al/common names.txt)
[CMD] [2023-10-13 11:23:11] echo "0a" > /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_vernaculars_30691.diff
[CMD] [2023-10-13 11:23:12] tail -n +1 /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_vernaculars_30691.csv >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_vernaculars_30691.diff
[CMD] [2023-10-13 11:23:12] echo "." >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_vernaculars_30691.diff
[INFO] [2023-10-13 11:23:12] Created diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_vernaculars_30691.diff (2 lines)
[INFO] [2023-10-13 11:23:12] ...occurrences (/app/public/data/O_Brien_et_al/occurrences.txt)
[CMD] [2023-10-13 11:23:12] echo "0a" > /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_occurrences_30694.diff
[CMD] [2023-10-13 11:23:12] tail -n +1 /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_occurrences_30694.csv >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_occurrences_30694.diff
[CMD] [2023-10-13 11:23:12] echo "." >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_occurrences_30694.diff
[INFO] [2023-10-13 11:23:12] Created diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_occurrences_30694.diff (194 lines)
[INFO] [2023-10-13 11:23:12] ...assocs (/app/public/data/O_Brien_et_al/associations.txt)
[CMD] [2023-10-13 11:23:12] echo "0a" > /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_assocs_30696.diff
[CMD] [2023-10-13 11:23:12] tail -n +1 /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_assocs_30696.csv >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_assocs_30696.diff
[CMD] [2023-10-13 11:23:12] echo "." >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_assocs_30696.diff
[INFO] [2023-10-13 11:23:12] Created diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_assocs_30696.diff (2 lines)
[INFO] [2023-10-13 11:23:12] ...measurements (/app/public/data/O_Brien_et_al/measurements or facts.txt)
[CMD] [2023-10-13 11:23:12] echo "0a" > /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_measurements_30695.diff
[CMD] [2023-10-13 11:23:12] tail -n +1 /app/public/data/O_Brien_et_al/converted_csv/O_Brien_et_al_measurements_30695.csv >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_measurements_30695.diff
[CMD] [2023-10-13 11:23:12] echo "." >> /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_measurements_30695.diff
[INFO] [2023-10-13 11:23:12] Created diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_measurements_30695.diff (3275 lines)
[STOP] [2023-10-13 11:23:12] calculate_delta
[START] [2023-10-13 11:23:12] parse_diff_and_store
[INFO] [2023-10-13 11:23:12] Handling diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_agents_30693.diff (2 lines)
[INFO] [2023-10-13 11:23:12] Loading agents diff file into memory (2 lines)...
[INFO] [2023-10-13 11:23:12] Handling diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_refs_30692.diff (30 lines)
[INFO] [2023-10-13 11:23:13] Loading refs diff file into memory (30 lines)...
[INFO] [2023-10-13 11:23:13] Storing 28 References (28/28/30)
[INFO] [2023-10-13 11:23:13] Handling diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_nodes_30690.diff (194 lines)
[INFO] [2023-10-13 11:23:13] Loading nodes diff file into memory (194 lines)...
[INFO] [2023-10-13 11:23:13] Storing 193 ScientificNames (386/192/194)
[INFO] [2023-10-13 11:23:13] Storing 193 Nodes (386/192/194)
[INFO] [2023-10-13 11:23:13] Handling diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_media_30689.diff (2 lines)
[INFO] [2023-10-13 11:23:13] Loading media diff file into memory (2 lines)...
[INFO] [2023-10-13 11:23:13] Handling diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_vernaculars_30691.diff (2 lines)
[INFO] [2023-10-13 11:23:13] Loading vernaculars diff file into memory (2 lines)...
[INFO] [2023-10-13 11:23:13] Handling diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_occurrences_30694.diff (194 lines)
[INFO] [2023-10-13 11:23:13] Loading occurrences diff file into memory (194 lines)...
[INFO] [2023-10-13 11:23:13] Storing 192 Occurrences (192/192/194)
[INFO] [2023-10-13 11:23:13] Handling diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_assocs_30696.diff (2 lines)
[INFO] [2023-10-13 11:23:13] Loading assocs diff file into memory (2 lines)...
[INFO] [2023-10-13 11:23:13] Handling diff: /app/public/data/O_Brien_et_al/diff/O_Brien_et_al_measurements_30695.diff (3275 lines)
[INFO] [2023-10-13 11:23:13] Loading measurements diff file into memory (3275 lines)...
[INFO] [2023-10-13 11:23:15] Storing 3081 Traits (13861/3273/3275)
[INFO] [2023-10-13 11:23:16] Storing 6156 MetaTraits (13861/3273/3275)
[INFO] [2023-10-13 11:23:17] Storing 4432 TraitsReferences (13861/3273/3275)
[INFO] [2023-10-13 11:23:17] Storing 192 OccurrenceMetadata (13861/3273/3275)
[STOP] [2023-10-13 11:23:17] parse_diff_and_store
[START] [2023-10-13 11:23:17] resolve_keys
[2023-10-13 11:23:17] Resolving downloaded urls (this is not actually downloading them yet)
[INFO] [2023-10-13 11:23:25] Occurrences to nodes (through scientific_names)...
[INFO] [2023-10-13 11:23:25] traits to occurrences...
[INFO] [2023-10-13 11:23:25] traits to nodes (through occurrences)...
[INFO] [2023-10-13 11:23:25] Traits to sex term...
[INFO] [2023-10-13 11:23:25] Traits to lifestage term...
[INFO] [2023-10-13 11:23:25] MetaTraits to traits...
[INFO] [2023-10-13 11:23:26] MetaTraits (simple, measurement row refers to parent) to traits...
[INFO] [2023-10-13 11:23:26] Assocs to occurrences...
[INFO] [2023-10-13 11:23:26] Assocs to nodes...
[INFO] [2023-10-13 11:23:26] Assoc to sex term...
[INFO] [2023-10-13 11:23:26] Assoc to lifestage term...
[INFO] [2023-10-13 11:23:26] MetaAssoc to assocs...
[STOP] [2023-10-13 11:23:26] resolve_keys
[START] [2023-10-13 11:23:26] hold_for_later_1
[STOP] [2023-10-13 11:23:26] hold_for_later_1
[START] [2023-10-13 11:23:26] hold_for_later_2
[STOP] [2023-10-13 11:23:26] hold_for_later_2
[START] [2023-10-13 11:23:26] resolve_missing_parents
[STOP] [2023-10-13 11:23:26] resolve_missing_parents
[START] [2023-10-13 11:23:26] rebuild_nodes
[START] [2023-10-13 11:23:26] Flattener#flatten
[START] [2023-10-13 11:23:26] Flattener#study_resource
[START] [2023-10-13 11:23:26] Flattener#build_ancestry
[STOP] [2023-10-13 11:23:26] Flattener#build_ancestry
[INFO] [2023-10-13 11:23:26] 193 ancestry keys
[START] [2023-10-13 11:23:26] build_node_ancestors
[INFO] [2023-10-13 11:23:26] old ancestors deleted.
[STOP] [2023-10-13 11:23:26] build_node_ancestors
[START] [2023-10-13 11:23:26] Flattener#propagate_ancestor_ids
[STOP] [2023-10-13 11:23:26] Flattener#propagate_ancestor_ids
[STOP] [2023-10-13 11:23:26] Flattener#flatten
[STOP] [2023-10-13 11:23:26] rebuild_nodes
[START] [2023-10-13 11:23:26] resolve_missing_media_owners
[STOP] [2023-10-13 11:23:26] resolve_missing_media_owners
[START] [2023-10-13 11:23:26] sanitize_media_verbatims
[STOP] [2023-10-13 11:23:26] sanitize_media_verbatims
[START] [2023-10-13 11:23:26] queue_downloads
[STOP] [2023-10-13 11:23:26] queue_downloads
[START] [2023-10-13 11:23:26] parse_names
[WARN] [2023-10-13 11:23:26] I see 193 names which still need to be parsed.
[WARN] [2023-10-13 11:23:26] Names to parse: 193 formatted: 193 learned: 189 parsed: 193
[STOP] [2023-10-13 11:23:27] parse_names
[START] [2023-10-13 11:23:27] denormalize_canonical_names_to_nodes
[STOP] [2023-10-13 11:23:27] denormalize_canonical_names_to_nodes
[START] [2023-10-13 11:23:27] match_nodes
[START] [2023-10-13 11:23:27] map_all_nodes_to_pages
[STOP] [2023-10-13 11:23:30] map_all_nodes_to_pages
[INFO] [2023-10-13 11:23:30] 33 Unmatched nodes (of 193)! That's too many to output. Full list in /app/public/data/O_Brien_et_al/unmatched_nodes.txt ; First 10: Canonical: Alisphaera spatula; Node#137154128; ResourceID: Alisphaera spatula; Canonical: Calcioconus; Node#137154142; ResourceID: Calcioconus; Canonical: Calyptrosphaera insignis; Node#137154159; ResourceID: Calyptrosphaera insignis; Canonical: Coccolithus pelagicus; Node#137154166; ResourceID: Coccolithus pelagicus; Canonical: Cribrosphaera ehrenbergii; Node#137154174; ResourceID: Cribrosphaera ehrenbergii; Canonical: Crystallolithus; Node#137154176; ResourceID: Crystallolithus; Canonical: Discosphaera tubifera; Node#137154180; ResourceID: Discosphaera tubifera; Canonical: Gephyrocapsids; Node#137154190; ResourceID: Gephyrocapsids; Canonical: Halopappus vahseli; Node#137154193; ResourceID: Halopappus vahseli; Canonical: Heimiella excentrica; Node#137154195; ResourceID: Heimiella excentrica
[START] [2023-10-13 11:23:30] update_nodes
[STOP] [2023-10-13 11:23:30] update_nodes
[STOP] [2023-10-13 11:23:30] match_nodes
[START] [2023-10-13 11:23:30] reindex_search
[STOP] [2023-10-13 11:23:30] reindex_search
[START] [2023-10-13 11:23:30] normalize_units
[STOP] [2023-10-13 11:23:40] normalize_units
[START] [2023-10-13 11:23:40] calculate_statistics
[INFO] [2023-10-13 11:23:40] Duplicate page_id count: 0
[STOP] [2023-10-13 11:23:40] calculate_statistics
[START] [2023-10-13 11:23:40] complete_harvest_instance
[START] [2023-10-13 11:23:40] overall_tsv_creation
[INFO] [2023-10-13 11:23:40] Exporting 193 nodes as TSV in batches of 10000...
[INFO] [2023-10-13 11:23:40] Processing group of 193 in 1 batches of 10000
[INFO] [2023-10-13 11:23:41] 3081 Traits (unfiltered) and 0 associations...
[INFO] [2023-10-13 11:23:41] Building Traits map for 193 nodes (this can take a while)...
[INFO] [2023-10-13 11:23:42] Mapped 3081 traits (6156 meta) for 193 nodes.
[INFO] [2023-10-13 11:23:42] Building Associations map (this can take a while)...
[INFO] [2023-10-13 11:23:42] Done. 0 assocs mapped (0 meta).
[INFO] [2023-10-13 11:23:42] Adding 3081 traits...
[INFO] [2023-10-13 11:23:42] 4300 metadata added.
[INFO] [2023-10-13 11:23:42] Adding 0 assocs...
[INFO] [2023-10-13 11:23:42] 0 metadata added.
[INFO] [2023-10-13 11:24:28] Processed 193/193 nodes
[INFO] [2023-10-13 11:24:28] Average Time: 47.12
[INFO] [2023-10-13 11:24:28] Total Time: 48s
[STOP] [2023-10-13 11:24:28] overall_tsv_creation
[INFO] [2023-10-13 11:24:28] Done. Check your files:
[INFO] [2023-10-13 11:24:28] (193 lines) /app/public/data/O_Brien_et_al/publish_nodes.tsv
[INFO] [2023-10-13 11:24:28] (192 lines) /app/public/data/O_Brien_et_al/publish_node_ancestors.tsv
[INFO] [2023-10-13 11:24:28] (193 lines) /app/public/data/O_Brien_et_al/publish_scientific_names.tsv
[INFO] [2023-10-13 11:24:28] (3082 lines) /app/public/data/O_Brien_et_al/publish_traits.tsv
[INFO] [2023-10-13 11:24:28] (4301 lines) /app/public/data/O_Brien_et_al/publish_metadata.tsv
[STOP] [2023-10-13 11:24:28] complete_harvest_instance
[START] [2023-10-13 11:24:28] completed
[STOP] [2023-10-13 11:24:28] completed
[STOP] [2023-10-13 11:24:28] logged process, took 78.71
Latest Process