Harvest for Marshall et al Created 13 Oct 10:08

Stage: completed
Fetched: 13 Oct 10:08
Validated: 13 Oct 10:08
Deltas Created 13 Oct 10:08
Units Normalized: 13 Oct 10:09
Ancestry Built: 13 Oct 10:08
Nodes Matched: 13 Oct 10:09
Names Parsed: 13 Oct 10:08
New Models Stored: 13 Oct 10:08
Indexed: 13 Oct 10:09
Completed: 13 Oct 10:10
Time to Harvest: less than a minute

Harvesting Log

(210 lines)
[INFO] [2023-10-13 10:08:20] Created harvest instance #4425
[STOP] [2023-10-13 10:08:20] create_harvest_instance
[START] [2023-10-13 10:08:20] fetch_files
[STOP] [2023-10-13 10:08:20] fetch_files
[START] [2023-10-13 10:08:20] validate_each_file
[INFO] [2023-10-13 10:08:20] Looping over 8 formats...
[INFO] [2023-10-13 10:08:20] ...agents (/app/public/data/Marshall_et_al/agents.txt)
[INFO] [2023-10-13 10:08:20] Valid: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_agents_30661.csv (0 lines)
[INFO] [2023-10-13 10:08:20] ...refs (/app/public/data/Marshall_et_al/references.txt)
[INFO] [2023-10-13 10:08:20] Valid: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_refs_30660.csv (406 lines)
[INFO] [2023-10-13 10:08:20] ...nodes (/app/public/data/Marshall_et_al/taxa.txt)
[INFO] [2023-10-13 10:08:20] Valid: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_nodes_30658.csv (992 lines)
[INFO] [2023-10-13 10:08:20] ...media (/app/public/data/Marshall_et_al/media.txt)
[INFO] [2023-10-13 10:08:20] Valid: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_media_30657.csv (0 lines)
[INFO] [2023-10-13 10:08:20] ...vernaculars (/app/public/data/Marshall_et_al/common names.txt)
[INFO] [2023-10-13 10:08:20] Valid: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_vernaculars_30659.csv (0 lines)
[INFO] [2023-10-13 10:08:20] ...occurrences (/app/public/data/Marshall_et_al/occurrences.txt)
[INFO] [2023-10-13 10:08:20] Valid: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_occurrences_30662.csv (992 lines)
[INFO] [2023-10-13 10:08:20] ...assocs (/app/public/data/Marshall_et_al/associations.txt)
[INFO] [2023-10-13 10:08:20] Valid: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_assocs_30664.csv (0 lines)
[INFO] [2023-10-13 10:08:20] ...measurements (/app/public/data/Marshall_et_al/measurements or facts.txt)
[INFO] [2023-10-13 10:08:21] Valid: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_measurements_30663.csv (4259 lines)
[STOP] [2023-10-13 10:08:21] validate_each_file
[START] [2023-10-13 10:08:21] convert_to_csv
[INFO] [2023-10-13 10:08:21] Looping over 8 formats...
[INFO] [2023-10-13 10:08:21] ...agents (/app/public/data/Marshall_et_al/agents.txt)
[CMD] [2023-10-13 10:08:21] /usr/bin/sort /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_agents_30661.csv > /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_agents_30661.csv_sorted
[INFO] [2023-10-13 10:08:21] Converted: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_agents_30661.csv (0 lines)
[INFO] [2023-10-13 10:08:21] ...refs (/app/public/data/Marshall_et_al/references.txt)
[CMD] [2023-10-13 10:08:21] /usr/bin/sort /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_refs_30660.csv > /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_refs_30660.csv_sorted
[INFO] [2023-10-13 10:08:21] Converted: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_refs_30660.csv (406 lines)
[INFO] [2023-10-13 10:08:21] ...nodes (/app/public/data/Marshall_et_al/taxa.txt)
[CMD] [2023-10-13 10:08:21] /usr/bin/sort /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_nodes_30658.csv > /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_nodes_30658.csv_sorted
[INFO] [2023-10-13 10:08:21] Converted: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_nodes_30658.csv (992 lines)
[INFO] [2023-10-13 10:08:21] ...media (/app/public/data/Marshall_et_al/media.txt)
[CMD] [2023-10-13 10:08:21] /usr/bin/sort /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_media_30657.csv > /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_media_30657.csv_sorted
[INFO] [2023-10-13 10:08:21] Converted: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_media_30657.csv (0 lines)
[INFO] [2023-10-13 10:08:21] ...vernaculars (/app/public/data/Marshall_et_al/common names.txt)
[CMD] [2023-10-13 10:08:21] /usr/bin/sort /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_vernaculars_30659.csv > /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_vernaculars_30659.csv_sorted
[INFO] [2023-10-13 10:08:21] Converted: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_vernaculars_30659.csv (0 lines)
[INFO] [2023-10-13 10:08:21] ...occurrences (/app/public/data/Marshall_et_al/occurrences.txt)
[CMD] [2023-10-13 10:08:21] /usr/bin/sort /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_occurrences_30662.csv > /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_occurrences_30662.csv_sorted
[INFO] [2023-10-13 10:08:21] Converted: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_occurrences_30662.csv (992 lines)
[INFO] [2023-10-13 10:08:21] ...assocs (/app/public/data/Marshall_et_al/associations.txt)
[CMD] [2023-10-13 10:08:21] /usr/bin/sort /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_assocs_30664.csv > /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_assocs_30664.csv_sorted
[INFO] [2023-10-13 10:08:21] Converted: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_assocs_30664.csv (0 lines)
[INFO] [2023-10-13 10:08:21] ...measurements (/app/public/data/Marshall_et_al/measurements or facts.txt)
[CMD] [2023-10-13 10:08:21] /usr/bin/sort /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_measurements_30663.csv > /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_measurements_30663.csv_sorted
[INFO] [2023-10-13 10:08:21] Converted: /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_measurements_30663.csv (4259 lines)
[STOP] [2023-10-13 10:08:21] convert_to_csv
[START] [2023-10-13 10:08:21] calculate_delta
[INFO] [2023-10-13 10:08:21] Looping over 8 formats...
[INFO] [2023-10-13 10:08:21] ...agents (/app/public/data/Marshall_et_al/agents.txt)
[CMD] [2023-10-13 10:08:21] echo "0a" > /app/public/data/Marshall_et_al/diff/Marshall_et_al_agents_30661.diff
[CMD] [2023-10-13 10:08:21] tail -n +1 /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_agents_30661.csv >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_agents_30661.diff
[CMD] [2023-10-13 10:08:21] echo "." >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_agents_30661.diff
[INFO] [2023-10-13 10:08:21] Created diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_agents_30661.diff (2 lines)
[INFO] [2023-10-13 10:08:21] ...refs (/app/public/data/Marshall_et_al/references.txt)
[CMD] [2023-10-13 10:08:21] echo "0a" > /app/public/data/Marshall_et_al/diff/Marshall_et_al_refs_30660.diff
[CMD] [2023-10-13 10:08:22] tail -n +1 /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_refs_30660.csv >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_refs_30660.diff
[CMD] [2023-10-13 10:08:22] echo "." >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_refs_30660.diff
[INFO] [2023-10-13 10:08:22] Created diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_refs_30660.diff (408 lines)
[INFO] [2023-10-13 10:08:22] ...nodes (/app/public/data/Marshall_et_al/taxa.txt)
[CMD] [2023-10-13 10:08:22] echo "0a" > /app/public/data/Marshall_et_al/diff/Marshall_et_al_nodes_30658.diff
[CMD] [2023-10-13 10:08:22] tail -n +1 /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_nodes_30658.csv >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_nodes_30658.diff
[CMD] [2023-10-13 10:08:22] echo "." >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_nodes_30658.diff
[INFO] [2023-10-13 10:08:22] Created diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_nodes_30658.diff (994 lines)
[INFO] [2023-10-13 10:08:22] ...media (/app/public/data/Marshall_et_al/media.txt)
[CMD] [2023-10-13 10:08:22] echo "0a" > /app/public/data/Marshall_et_al/diff/Marshall_et_al_media_30657.diff
[CMD] [2023-10-13 10:08:22] tail -n +1 /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_media_30657.csv >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_media_30657.diff
[CMD] [2023-10-13 10:08:22] echo "." >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_media_30657.diff
[INFO] [2023-10-13 10:08:22] Created diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_media_30657.diff (2 lines)
[INFO] [2023-10-13 10:08:22] ...vernaculars (/app/public/data/Marshall_et_al/common names.txt)
[CMD] [2023-10-13 10:08:22] echo "0a" > /app/public/data/Marshall_et_al/diff/Marshall_et_al_vernaculars_30659.diff
[CMD] [2023-10-13 10:08:22] tail -n +1 /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_vernaculars_30659.csv >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_vernaculars_30659.diff
[CMD] [2023-10-13 10:08:22] echo "." >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_vernaculars_30659.diff
[INFO] [2023-10-13 10:08:22] Created diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_vernaculars_30659.diff (2 lines)
[INFO] [2023-10-13 10:08:22] ...occurrences (/app/public/data/Marshall_et_al/occurrences.txt)
[CMD] [2023-10-13 10:08:22] echo "0a" > /app/public/data/Marshall_et_al/diff/Marshall_et_al_occurrences_30662.diff
[CMD] [2023-10-13 10:08:22] tail -n +1 /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_occurrences_30662.csv >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_occurrences_30662.diff
[CMD] [2023-10-13 10:08:23] echo "." >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_occurrences_30662.diff
[INFO] [2023-10-13 10:08:23] Created diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_occurrences_30662.diff (994 lines)
[INFO] [2023-10-13 10:08:23] ...assocs (/app/public/data/Marshall_et_al/associations.txt)
[CMD] [2023-10-13 10:08:23] echo "0a" > /app/public/data/Marshall_et_al/diff/Marshall_et_al_assocs_30664.diff
[CMD] [2023-10-13 10:08:23] tail -n +1 /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_assocs_30664.csv >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_assocs_30664.diff
[CMD] [2023-10-13 10:08:23] echo "." >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_assocs_30664.diff
[INFO] [2023-10-13 10:08:23] Created diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_assocs_30664.diff (2 lines)
[INFO] [2023-10-13 10:08:23] ...measurements (/app/public/data/Marshall_et_al/measurements or facts.txt)
[CMD] [2023-10-13 10:08:23] echo "0a" > /app/public/data/Marshall_et_al/diff/Marshall_et_al_measurements_30663.diff
[CMD] [2023-10-13 10:08:23] tail -n +1 /app/public/data/Marshall_et_al/converted_csv/Marshall_et_al_measurements_30663.csv >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_measurements_30663.diff
[CMD] [2023-10-13 10:08:23] echo "." >> /app/public/data/Marshall_et_al/diff/Marshall_et_al_measurements_30663.diff
[INFO] [2023-10-13 10:08:23] Created diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_measurements_30663.diff (4261 lines)
[STOP] [2023-10-13 10:08:23] calculate_delta
[START] [2023-10-13 10:08:23] parse_diff_and_store
[INFO] [2023-10-13 10:08:23] Handling diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_agents_30661.diff (2 lines)
[INFO] [2023-10-13 10:08:23] Loading agents diff file into memory (2 lines)...
[INFO] [2023-10-13 10:08:23] Handling diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_refs_30660.diff (408 lines)
[INFO] [2023-10-13 10:08:23] Loading refs diff file into memory (408 lines)...
[INFO] [2023-10-13 10:08:23] Storing 406 References (406/406/408)
[INFO] [2023-10-13 10:08:23] Handling diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_nodes_30658.diff (994 lines)
[INFO] [2023-10-13 10:08:23] Loading nodes diff file into memory (994 lines)...
[WARN] [2023-10-13 10:08:23] Filtered Scientific Name `Aplysia  dactylomela` to `Aplysia dactylomela`
[WARN] [2023-10-13 10:08:24] Filtered Scientific Name `Naineris laevigata   ` to `Naineris laevigata `
[WARN] [2023-10-13 10:08:24] Filtered Scientific Name `Sphaeropomatus  miamiens` to `Sphaeropomatus miamiens`
[INFO] [2023-10-13 10:08:24] Storing 993 ScientificNames (1986/992/994)
[INFO] [2023-10-13 10:08:24] Storing 993 Nodes (1986/992/994)
[INFO] [2023-10-13 10:08:24] Handling diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_media_30657.diff (2 lines)
[INFO] [2023-10-13 10:08:24] Loading media diff file into memory (2 lines)...
[INFO] [2023-10-13 10:08:24] Handling diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_vernaculars_30659.diff (2 lines)
[INFO] [2023-10-13 10:08:24] Loading vernaculars diff file into memory (2 lines)...
[INFO] [2023-10-13 10:08:24] Handling diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_occurrences_30662.diff (994 lines)
[INFO] [2023-10-13 10:08:24] Loading occurrences diff file into memory (994 lines)...
[INFO] [2023-10-13 10:08:25] Storing 992 Occurrences (2791/992/994)
[INFO] [2023-10-13 10:08:25] Storing 1799 OccurrenceMetadata (2791/992/994)
[INFO] [2023-10-13 10:08:25] Handling diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_assocs_30664.diff (2 lines)
[INFO] [2023-10-13 10:08:25] Loading assocs diff file into memory (2 lines)...
[INFO] [2023-10-13 10:08:25] Handling diff: /app/public/data/Marshall_et_al/diff/Marshall_et_al_measurements_30663.diff (4261 lines)
[INFO] [2023-10-13 10:08:25] Loading measurements diff file into memory (4261 lines)...
[INFO] [2023-10-13 10:08:27] Storing 2578 TraitsReferences (12044/4259/4261)
[INFO] [2023-10-13 10:08:28] Storing 2580 Traits (12044/4259/4261)
[INFO] [2023-10-13 10:08:28] Storing 3609 MetaTraits (12044/4259/4261)
[INFO] [2023-10-13 10:08:29] Storing 3277 OccurrenceMetadata (12044/4259/4261)
[STOP] [2023-10-13 10:08:29] parse_diff_and_store
[START] [2023-10-13 10:08:29] resolve_keys
[2023-10-13 10:08:30] Resolving downloaded urls (this is not actually downloading them yet)
[INFO] [2023-10-13 10:08:37] Occurrences to nodes (through scientific_names)...
[INFO] [2023-10-13 10:08:38] traits to occurrences...
[INFO] [2023-10-13 10:08:38] traits to nodes (through occurrences)...
[INFO] [2023-10-13 10:08:38] Traits to sex term...
[INFO] [2023-10-13 10:08:38] Traits to lifestage term...
[INFO] [2023-10-13 10:08:38] MetaTraits to traits...
[INFO] [2023-10-13 10:08:38] MetaTraits (simple, measurement row refers to parent) to traits...
[INFO] [2023-10-13 10:08:38] Assocs to occurrences...
[INFO] [2023-10-13 10:08:38] Assocs to nodes...
[INFO] [2023-10-13 10:08:38] Assoc to sex term...
[INFO] [2023-10-13 10:08:38] Assoc to lifestage term...
[INFO] [2023-10-13 10:08:38] MetaAssoc to assocs...
[STOP] [2023-10-13 10:08:38] resolve_keys
[START] [2023-10-13 10:08:38] hold_for_later_1
[STOP] [2023-10-13 10:08:38] hold_for_later_1
[START] [2023-10-13 10:08:38] hold_for_later_2
[STOP] [2023-10-13 10:08:38] hold_for_later_2
[START] [2023-10-13 10:08:38] resolve_missing_parents
[STOP] [2023-10-13 10:08:38] resolve_missing_parents
[START] [2023-10-13 10:08:38] rebuild_nodes
[START] [2023-10-13 10:08:38] Flattener#flatten
[START] [2023-10-13 10:08:38] Flattener#study_resource
[START] [2023-10-13 10:08:38] Flattener#build_ancestry
[STOP] [2023-10-13 10:08:38] Flattener#build_ancestry
[INFO] [2023-10-13 10:08:38] 993 ancestry keys
[START] [2023-10-13 10:08:38] build_node_ancestors
[INFO] [2023-10-13 10:08:39] old ancestors deleted.
[STOP] [2023-10-13 10:08:39] build_node_ancestors
[START] [2023-10-13 10:08:39] Flattener#propagate_ancestor_ids
[STOP] [2023-10-13 10:08:39] Flattener#propagate_ancestor_ids
[STOP] [2023-10-13 10:08:39] Flattener#flatten
[STOP] [2023-10-13 10:08:39] rebuild_nodes
[START] [2023-10-13 10:08:39] resolve_missing_media_owners
[STOP] [2023-10-13 10:08:39] resolve_missing_media_owners
[START] [2023-10-13 10:08:39] sanitize_media_verbatims
[STOP] [2023-10-13 10:08:39] sanitize_media_verbatims
[START] [2023-10-13 10:08:39] queue_downloads
[STOP] [2023-10-13 10:08:39] queue_downloads
[START] [2023-10-13 10:08:39] parse_names
[WARN] [2023-10-13 10:08:39] I see 993 names which still need to be parsed.
[WARN] [2023-10-13 10:08:39] Names to parse: 993 formatted: 993 learned: 913 parsed: 993
[STOP] [2023-10-13 10:08:40] parse_names
[START] [2023-10-13 10:08:40] denormalize_canonical_names_to_nodes
[STOP] [2023-10-13 10:08:40] denormalize_canonical_names_to_nodes
[START] [2023-10-13 10:08:40] match_nodes
[START] [2023-10-13 10:08:40] map_all_nodes_to_pages
[STOP] [2023-10-13 10:09:15] map_all_nodes_to_pages
[INFO] [2023-10-13 10:09:15] 242 Unmatched nodes (of 993)! That's too many to output. Full list in /app/public/data/Marshall_et_al/unmatched_nodes.txt ; First 10: Canonical: Abarenicola pacifica; Node#137017275; ResourceID: Abarenicola pacifica; Canonical: Abarenicola vagabunda; Node#137017276; ResourceID: Abarenicola vagabunda; Canonical: Adalaria proxima; Node#137017287; ResourceID: Adalaria proxima; Canonical: Aglajidae; Node#137017291; ResourceID: Aglajidae; Canonical: Alderia willowi; Node#137017294; ResourceID: Alderia willowi; Canonical: Amaena occidentalis; Node#137017298; ResourceID: Amaena occidentalis; Canonical: Amathis lutzi; Node#137017299; ResourceID: Amathis lutzi; Canonical: Amphiura kochii; Node#137017312; ResourceID: Amphiura kochii; Canonical: Amphiura stimpsoni; Node#137017313; ResourceID: Amphiura stimpsoni; Canonical: Amphysamytha galapagensi; Node#137017315; ResourceID: Amphysamytha galapagensi
[START] [2023-10-13 10:09:15] update_nodes
[STOP] [2023-10-13 10:09:15] update_nodes
[STOP] [2023-10-13 10:09:15] match_nodes
[START] [2023-10-13 10:09:15] reindex_search
[STOP] [2023-10-13 10:09:16] reindex_search
[START] [2023-10-13 10:09:16] normalize_units
[STOP] [2023-10-13 10:09:19] normalize_units
[START] [2023-10-13 10:09:20] calculate_statistics
[INFO] [2023-10-13 10:09:23] Duplicate page_id count: 0
[STOP] [2023-10-13 10:09:23] calculate_statistics
[START] [2023-10-13 10:09:23] complete_harvest_instance
[START] [2023-10-13 10:09:23] overall_tsv_creation
[INFO] [2023-10-13 10:09:23] Exporting 993 nodes as TSV in batches of 10000...
[INFO] [2023-10-13 10:09:23] Processing group of 993 in 1 batches of 10000
[INFO] [2023-10-13 10:09:24] 2577 Traits (unfiltered) and 0 associations...
[INFO] [2023-10-13 10:09:24] Building Traits map for 993 nodes (this can take a while)...
[INFO] [2023-10-13 10:09:26] Mapped 2577 traits (3603 meta) for 993 nodes.
[INFO] [2023-10-13 10:09:26] Building Associations map (this can take a while)...
[INFO] [2023-10-13 10:09:26] Done. 0 assocs mapped (0 meta).
[INFO] [2023-10-13 10:09:26] Adding 2577 traits...
[INFO] [2023-10-13 10:09:27] 13900 metadata added.
[INFO] [2023-10-13 10:09:27] Adding 0 assocs...
[INFO] [2023-10-13 10:09:27] 0 metadata added.
[INFO] [2023-10-13 10:10:12] Processed 993/993 nodes
[INFO] [2023-10-13 10:10:12] Average Time: 49.36
[INFO] [2023-10-13 10:10:12] Total Time: 50s
[STOP] [2023-10-13 10:10:12] overall_tsv_creation
[INFO] [2023-10-13 10:10:12] Done. Check your files:
[INFO] [2023-10-13 10:10:13] (913 lines) /app/public/data/Marshall_et_al/publish_nodes.tsv
[INFO] [2023-10-13 10:10:13] (912 lines) /app/public/data/Marshall_et_al/publish_node_ancestors.tsv
[INFO] [2023-10-13 10:10:13] (993 lines) /app/public/data/Marshall_et_al/publish_scientific_names.tsv
[INFO] [2023-10-13 10:10:13] (2578 lines) /app/public/data/Marshall_et_al/publish_traits.tsv
[INFO] [2023-10-13 10:10:13] (13901 lines) /app/public/data/Marshall_et_al/publish_metadata.tsv
[STOP] [2023-10-13 10:10:13] complete_harvest_instance
[START] [2023-10-13 10:10:13] completed
[STOP] [2023-10-13 10:10:13] completed
[STOP] [2023-10-13 10:10:13] logged process, took 113.06

Latest Process