Stage:
completed
Fetched:
28 Oct 14:17
Validated:
28 Oct 14:17
Deltas Created
28 Oct 14:17
Units Normalized:
28 Oct 14:18
Ancestry Built:
28 Oct 14:18
Nodes Matched:
28 Oct 14:18
Names Parsed:
28 Oct 14:18
New Models Stored:
28 Oct 14:17
Indexed:
28 Oct 14:18
Completed:
28 Oct 14:22
Time to Harvest:
less than a minute
Harvesting Log
(209 lines)
[INFO] [2021-10-28 14:17:39] Created harvest instance #4069
[STOP] [2021-10-28 14:17:39] create_harvest_instance
[START] [2021-10-28 14:17:39] fetch_files
[STOP] [2021-10-28 14:17:39] fetch_files
[START] [2021-10-28 14:17:39] validate_each_file
[INFO] [2021-10-28 14:17:39] Looping over 4 formats...
[INFO] [2021-10-28 14:17:39] ...nodes (/app/public/data/si_contribution2/taxon.tab)
[INFO] [2021-10-28 14:17:39] Valid: /app/public/converted_csv/si_contribution2_nodes_4069.csv (1567 lines)
[INFO] [2021-10-28 14:17:39] ...media (/app/public/data/si_contribution2/media_resource.tab)
[INFO] [2021-10-28 14:17:39] Valid: /app/public/converted_csv/si_contribution2_media_4069.csv (1505 lines)
[INFO] [2021-10-28 14:17:39] ...occurrences (/app/public/data/si_contribution2/occurrence_specific.tab)
[INFO] [2021-10-28 14:17:39] Valid: /app/public/converted_csv/si_contribution2_occurrences_4069.csv (6057 lines)
[INFO] [2021-10-28 14:17:39] ...measurements (/app/public/data/si_contribution2/measurement_or_fact_specific.tab)
[INFO] [2021-10-28 14:17:39] Valid: /app/public/converted_csv/si_contribution2_measurements_4069.csv (6057 lines)
[STOP] [2021-10-28 14:17:39] validate_each_file
[START] [2021-10-28 14:17:39] convert_to_csv
[INFO] [2021-10-28 14:17:39] Looping over 4 formats...
[INFO] [2021-10-28 14:17:39] ...nodes (/app/public/data/si_contribution2/taxon.tab)
[CMD] [2021-10-28 14:17:39] /usr/bin/sort /app/public/converted_csv/si_contribution2_nodes_4069.csv > /app/public/converted_csv/si_contribution2_nodes_4069.csv_sorted
[INFO] [2021-10-28 14:17:40] Converted: /app/public/converted_csv/si_contribution2_nodes_4069.csv (1567 lines)
[INFO] [2021-10-28 14:17:40] ...media (/app/public/data/si_contribution2/media_resource.tab)
[CMD] [2021-10-28 14:17:40] /usr/bin/sort /app/public/converted_csv/si_contribution2_media_4069.csv > /app/public/converted_csv/si_contribution2_media_4069.csv_sorted
[INFO] [2021-10-28 14:17:40] Converted: /app/public/converted_csv/si_contribution2_media_4069.csv (1505 lines)
[INFO] [2021-10-28 14:17:40] ...occurrences (/app/public/data/si_contribution2/occurrence_specific.tab)
[CMD] [2021-10-28 14:17:40] /usr/bin/sort /app/public/converted_csv/si_contribution2_occurrences_4069.csv > /app/public/converted_csv/si_contribution2_occurrences_4069.csv_sorted
[INFO] [2021-10-28 14:17:40] Converted: /app/public/converted_csv/si_contribution2_occurrences_4069.csv (6057 lines)
[INFO] [2021-10-28 14:17:40] ...measurements (/app/public/data/si_contribution2/measurement_or_fact_specific.tab)
[CMD] [2021-10-28 14:17:40] /usr/bin/sort /app/public/converted_csv/si_contribution2_measurements_4069.csv > /app/public/converted_csv/si_contribution2_measurements_4069.csv_sorted
[INFO] [2021-10-28 14:17:40] Converted: /app/public/converted_csv/si_contribution2_measurements_4069.csv (6057 lines)
[STOP] [2021-10-28 14:17:40] convert_to_csv
[START] [2021-10-28 14:17:40] calculate_delta
[INFO] [2021-10-28 14:17:40] Looping over 4 formats...
[INFO] [2021-10-28 14:17:40] ...nodes (/app/public/data/si_contribution2/taxon.tab)
[CMD] [2021-10-28 14:17:40] echo "0a" > /app/public/diff/si_contribution2_nodes_4069.diff
[CMD] [2021-10-28 14:17:41] tail -n +1 /app/public/converted_csv/si_contribution2_nodes_4069.csv >> /app/public/diff/si_contribution2_nodes_4069.diff
[CMD] [2021-10-28 14:17:41] echo "." >> /app/public/diff/si_contribution2_nodes_4069.diff
[INFO] [2021-10-28 14:17:41] Created diff: /app/public/diff/si_contribution2_nodes_4069.diff (1569 lines)
[INFO] [2021-10-28 14:17:41] ...media (/app/public/data/si_contribution2/media_resource.tab)
[CMD] [2021-10-28 14:17:41] echo "0a" > /app/public/diff/si_contribution2_media_4069.diff
[CMD] [2021-10-28 14:17:41] tail -n +1 /app/public/converted_csv/si_contribution2_media_4069.csv >> /app/public/diff/si_contribution2_media_4069.diff
[CMD] [2021-10-28 14:17:42] echo "." >> /app/public/diff/si_contribution2_media_4069.diff
[INFO] [2021-10-28 14:17:42] Created diff: /app/public/diff/si_contribution2_media_4069.diff (1507 lines)
[INFO] [2021-10-28 14:17:42] ...occurrences (/app/public/data/si_contribution2/occurrence_specific.tab)
[CMD] [2021-10-28 14:17:42] echo "0a" > /app/public/diff/si_contribution2_occurrences_4069.diff
[CMD] [2021-10-28 14:17:42] tail -n +1 /app/public/converted_csv/si_contribution2_occurrences_4069.csv >> /app/public/diff/si_contribution2_occurrences_4069.diff
[CMD] [2021-10-28 14:17:43] echo "." >> /app/public/diff/si_contribution2_occurrences_4069.diff
[INFO] [2021-10-28 14:17:43] Created diff: /app/public/diff/si_contribution2_occurrences_4069.diff (6059 lines)
[INFO] [2021-10-28 14:17:43] ...measurements (/app/public/data/si_contribution2/measurement_or_fact_specific.tab)
[CMD] [2021-10-28 14:17:43] echo "0a" > /app/public/diff/si_contribution2_measurements_4069.diff
[CMD] [2021-10-28 14:17:43] tail -n +1 /app/public/converted_csv/si_contribution2_measurements_4069.csv >> /app/public/diff/si_contribution2_measurements_4069.diff
[CMD] [2021-10-28 14:17:43] echo "." >> /app/public/diff/si_contribution2_measurements_4069.diff
[INFO] [2021-10-28 14:17:44] Created diff: /app/public/diff/si_contribution2_measurements_4069.diff (6059 lines)
[STOP] [2021-10-28 14:17:44] calculate_delta
[START] [2021-10-28 14:17:44] parse_diff_and_store
[INFO] [2021-10-28 14:17:44] Handling diff: /app/public/diff/si_contribution2_nodes_4069.diff (1569 lines)
[INFO] [2021-10-28 14:17:44] Loading nodes diff file into memory (1569 /app/public/diff/si_contribution2_nodes_4069.diff lines)...
[INFO] [2021-10-28 14:17:45] Handling diff: /app/public/diff/si_contribution2_media_4069.diff (1507 lines)
[INFO] [2021-10-28 14:17:45] Loading media diff file into memory (1507 /app/public/diff/si_contribution2_media_4069.diff lines)...
[INFO] [2021-10-28 14:17:47] Handling diff: /app/public/diff/si_contribution2_occurrences_4069.diff (6059 lines)
[INFO] [2021-10-28 14:17:48] Loading occurrences diff file into memory (6059 /app/public/diff/si_contribution2_occurrences_4069.diff lines)...
[INFO] [2021-10-28 14:17:48] Handling diff: /app/public/diff/si_contribution2_measurements_4069.diff (6059 lines)
[INFO] [2021-10-28 14:17:49] Loading measurements diff file into memory (6059 /app/public/diff/si_contribution2_measurements_4069.diff lines)...
[INFO] [2021-10-28 14:17:52] Storing 1567 ScientificNames
[INFO] [2021-10-28 14:17:52] Processing group of 1567 in 2 groups of 1000
[INFO] [2021-10-28 14:17:53] Average Time: 0.405
[INFO] [2021-10-28 14:17:53] Total Time: 1s
[INFO] [2021-10-28 14:17:53] Storing 1567 Nodes
[INFO] [2021-10-28 14:17:53] Processing group of 1567 in 2 groups of 1000
[INFO] [2021-10-28 14:17:53] Average Time: 0.2
[INFO] [2021-10-28 14:17:53] Total Time: 1s
[INFO] [2021-10-28 14:17:53] Storing 1505 BibliographicCitations
[INFO] [2021-10-28 14:17:53] Processing group of 1505 in 2 groups of 1000
[INFO] [2021-10-28 14:17:53] Average Time: 0.115
[INFO] [2021-10-28 14:17:53] Total Time: 1s
[INFO] [2021-10-28 14:17:53] Storing 1505 ArticlesSections
[INFO] [2021-10-28 14:17:53] Processing group of 1505 in 2 groups of 1000
[INFO] [2021-10-28 14:17:54] Average Time: 0.04
[INFO] [2021-10-28 14:17:54] Total Time: 1s
[INFO] [2021-10-28 14:17:54] Storing 1505 Articles
[INFO] [2021-10-28 14:17:54] Processing group of 1505 in 2 groups of 1000
[INFO] [2021-10-28 14:17:54] Average Time: 0.325
[INFO] [2021-10-28 14:17:54] Total Time: 1s
[INFO] [2021-10-28 14:17:54] Storing 6057 Occurrences
[INFO] [2021-10-28 14:17:54] Processing group of 6057 in 7 groups of 1000
[INFO] [2021-10-28 14:17:55] Average Time: 0.103
[INFO] [2021-10-28 14:17:55] Total Time: 1s
[INFO] [2021-10-28 14:17:55] last 3 / first 3: 0.79
[INFO] [2021-10-28 14:17:55] Std.Dev: 0.03162277660168379; Max: 0.12
[INFO] [2021-10-28 14:17:55] Storing 6057 Traits
[INFO] [2021-10-28 14:17:55] Processing group of 6057 in 7 groups of 1000
[INFO] [2021-10-28 14:17:57] Average Time: 0.264
[INFO] [2021-10-28 14:17:57] Total Time: 2s
[INFO] [2021-10-28 14:17:57] last 3 / first 3: 0.6
[INFO] [2021-10-28 14:17:57] Std.Dev: 0.11401754250991379; Max: 0.36
[INFO] [2021-10-28 14:17:57] Storing 12114 MetaTraits
[INFO] [2021-10-28 14:17:57] Processing group of 12114 in 13 groups of 1000
[INFO] [2021-10-28 14:17:59] Average Time: 0.118
[INFO] [2021-10-28 14:17:59] Total Time: 2s
[INFO] [2021-10-28 14:17:59] last 3 / first 3: 0.7
[INFO] [2021-10-28 14:17:59] Std.Dev: 0.03162277660168379; Max: 0.19
[STOP] [2021-10-28 14:17:59] parse_diff_and_store
[START] [2021-10-28 14:17:59] resolve_keys
[INFO] [2021-10-28 14:18:17] Occurrences to nodes (through scientific_names)...
[INFO] [2021-10-28 14:18:17] traits to occurrences...
[INFO] [2021-10-28 14:18:18] traits to nodes (through occurrences)...
[INFO] [2021-10-28 14:18:18] Traits to sex term...
[INFO] [2021-10-28 14:18:18] Traits to lifestage term...
[INFO] [2021-10-28 14:18:18] MetaTraits to traits...
[INFO] [2021-10-28 14:18:18] MetaTraits (simple, measurement row refers to parent) to traits...
[INFO] [2021-10-28 14:18:18] Assocs to occurrences...
[INFO] [2021-10-28 14:18:18] Assocs to nodes...
[INFO] [2021-10-28 14:18:18] Assoc to sex term...
[INFO] [2021-10-28 14:18:18] Assoc to lifestage term...
[INFO] [2021-10-28 14:18:18] MetaAssoc to assocs...
[STOP] [2021-10-28 14:18:18] resolve_keys
[START] [2021-10-28 14:18:18] hold_for_later_1
[STOP] [2021-10-28 14:18:18] hold_for_later_1
[START] [2021-10-28 14:18:18] hold_for_later_2
[STOP] [2021-10-28 14:18:18] hold_for_later_2
[START] [2021-10-28 14:18:18] resolve_missing_parents
[STOP] [2021-10-28 14:18:18] resolve_missing_parents
[START] [2021-10-28 14:18:18] rebuild_nodes
[START] [2021-10-28 14:18:18] Flattener#flatten
[START] [2021-10-28 14:18:18] Flattener#study_resource
[START] [2021-10-28 14:18:18] Flattener#build_ancestry
[STOP] [2021-10-28 14:18:18] Flattener#build_ancestry
[INFO] [2021-10-28 14:18:18] 1567 ancestry keys
[START] [2021-10-28 14:18:18] build_node_ancestors
[INFO] [2021-10-28 14:18:18] old ancestors deleted.
[STOP] [2021-10-28 14:18:18] build_node_ancestors
[WARN] [2021-10-28 14:18:18] Flattener: nothing to flatten! (Completely flat resource?)
[STOP] [2021-10-28 14:18:18] Flattener#flatten
[STOP] [2021-10-28 14:18:18] rebuild_nodes
[START] [2021-10-28 14:18:18] resolve_missing_media_owners
[STOP] [2021-10-28 14:18:18] resolve_missing_media_owners
[START] [2021-10-28 14:18:18] sanitize_media_verbatims
[STOP] [2021-10-28 14:18:18] sanitize_media_verbatims
[START] [2021-10-28 14:18:18] queue_downloads
[STOP] [2021-10-28 14:18:18] queue_downloads
[START] [2021-10-28 14:18:18] parse_names
[WARN] [2021-10-28 14:18:18] I see 1567 names which still need to be parsed.
[WARN] [2021-10-28 14:18:19] Names to parse: 1567 formatted: 1567 learned: 1567 parsed: 1567
[STOP] [2021-10-28 14:18:21] parse_names
[START] [2021-10-28 14:18:21] denormalize_canonical_names_to_nodes
[STOP] [2021-10-28 14:18:21] denormalize_canonical_names_to_nodes
[START] [2021-10-28 14:18:21] match_nodes
[START] [2021-10-28 14:18:21] map_all_nodes_to_pages
[STOP] [2021-10-28 14:18:41] map_all_nodes_to_pages
[INFO] [2021-10-28 14:18:41] 232 Unmatched nodes (of 1567)! That's too many to output. Full list in /app/public/data/si_contribution2/unmatched_nodes.txt ; First 10: Canonical: Propagulifera; Node#100939541; ResourceID: 00b6dab5398ce2cdc6b9edcbf82bf420; Canonical: Pseudoparmelia baltimorensis; Node#100939548; ResourceID: 02cc3b9bd63c12b83e90645357b02014; Canonical: Rigodium hylocomioides; Node#100939549; ResourceID: 02df0d6f4a396acc87b0a61f74b9989c; Canonical: Psetuioparmelia zambiensis; Node#100939550; ResourceID: 03154929cf9bc633afea6f94dc4f1c43; Canonical: Dicranella costata; Node#100939552; ResourceID: 03616e890c7a51244e932cb8a1f6e147; Canonical: Hypotrachyna minima; Node#100939562; ResourceID: 068fd249aba4432d2f27e44f0d070529; Canonical: Desmarestia ligulata ligulata; Node#100939579; ResourceID: 09c9e15c23a8a58a4689fd0b8220d51a; Canonical: Dudresnaya colombiana; Node#100939592; ResourceID: 0cc05546e19211f98cdffd9fee4d9202; Canonical: Rapanea st�-johnii; Node#100939596; ResourceID: 0cfa687a9b2367b77b4864277ca2afed; Canonical: Rhacopilum tomentosum; Node#100939608; ResourceID: 0ebc639eb3f25e958f2c12ad46104619
[START] [2021-10-28 14:18:41] update_nodes
[STOP] [2021-10-28 14:18:42] update_nodes
[STOP] [2021-10-28 14:18:42] match_nodes
[START] [2021-10-28 14:18:42] reindex_search
[STOP] [2021-10-28 14:18:43] reindex_search
[START] [2021-10-28 14:18:43] normalize_units
[STOP] [2021-10-28 14:18:43] normalize_units
[START] [2021-10-28 14:18:43] calculate_statistics
[2021-10-28 14:18:43] ZERO NODE ANCESTORS. Is this actually a completely flat resource?
[2021-10-28 14:18:43] (NEAR) DUPLICATE TRAITS FOUND! There are only 6033 (of 6057 total) unique traits.
[2021-10-28 14:19:11] (Near) duplicate trait pairs (up to 100):
[2021-10-28 14:19:11] (resource_pk: 062fdaef97a9b2480c9c76ceb086925d_10088_6943_ENV, id: 235840167), (resource_pk: a04c17cb50727083b1c9692508a61f68_10088_6943_ENV, id: 235843835)
[2021-10-28 14:19:11] (resource_pk: 0f0487ae99ecca1d74bc68258a81cc93_10088_6943_ENV, id: 235840372), (resource_pk: 32e3c6c0a824b51b84cd0c5028889737_10088_6943_ENV, id: 235841236)
[2021-10-28 14:19:11] (resource_pk: 0f0487ae99ecca1d74bc68258a81cc93_10088_6943_ENV, id: 235840372), (resource_pk: b1446d93e60e71198d704bbe3adf8e43_10088_6943_ENV, id: 235844240)
[2021-10-28 14:19:11] (resource_pk: 1bea6e9235a32dd72dd42baab1c20722_10088_6943_ENV, id: 235840671), (resource_pk: c75ba07c67d5a62479c3ece963886f3e_10088_6943_ENV, id: 235844785)
[2021-10-28 14:19:11] (resource_pk: 1edabbd7e2052ec1c52c1beb17f332a5_10088_6943_ENV, id: 235840741), (resource_pk: e92ce79e7769c8ba7e5cb62e19b48f25_10088_6943_ENV, id: 235845539)
[2021-10-28 14:19:11] (resource_pk: 218df6e41f0598d088e708071901f343_10088_6943_ENV, id: 235840811), (resource_pk: 7099d99bc1c32b289c376de137dd9cd7_10088_6943_ENV, id: 235842667)
[2021-10-28 14:19:11] (resource_pk: 2b8ea11503cdd31555919666674edfaa_10088_6943_ENV, id: 235841054), (resource_pk: 9ae7d68218ed5531a44eaa48d04cdb56_10088_6943_ENV, id: 235843693)
[2021-10-28 14:19:11] (resource_pk: 32e3c6c0a824b51b84cd0c5028889737_10088_6943_ENV, id: 235841236), (resource_pk: b1446d93e60e71198d704bbe3adf8e43_10088_6943_ENV, id: 235844240)
[2021-10-28 14:19:11] (resource_pk: 373e961e81056bf1938a9db26a963b92_10088_6943_ENV, id: 235841322), (resource_pk: 62332b1a48243ac871e6c290fd59939c_10088_6943_ENV, id: 235842343)
[2021-10-28 14:19:11] (resource_pk: 3ce618c32a4a27871be0f0d1be0ff6ba_10088_6943_ENV, id: 235841454), (resource_pk: e6d280bf1b47a63d00871837e22e1429_10088_6943_ENV, id: 235845487)
[2021-10-28 14:19:11] (resource_pk: 3f2db25c20c5226ef237c9308cd12813_10088_6943_ENV, id: 235841512), (resource_pk: 50ea019cd037be4b77ee4a285414ad7d_10088_6943_ENV, id: 235841937)
[2021-10-28 14:19:11] (resource_pk: 4d7441096fd64c7e0e70d1eeca1de9e7_10088_6943_ENV, id: 235841845), (resource_pk: 6cb35ad59411b7e66facd7e851f261c9_10088_6943_ENV, id: 235842574)
[2021-10-28 14:19:11] (resource_pk: 515402b0d2a0c83d48c3a0f522d0c761_10088_6943_ENV, id: 235841950), (resource_pk: 98668f740d8dc3b4304c3e7bdb49b266_10088_6943_ENV, id: 235843620)
[2021-10-28 14:19:11] (resource_pk: 539dab06186be2aabb01df9bdaa16203_10088_6943_ENV, id: 235841996), (resource_pk: 9c09b269654f5fbb13be2c7ec76d39ca_10088_6943_ENV, id: 235843727)
[2021-10-28 14:19:11] (resource_pk: 6bb75769661c74fab56b289ff84454a9_10088_6943_ENV, id: 235842552), (resource_pk: 734fcfb2a0be0c24fd3ad8ad65cbc1b6_10088_6943_ENV, id: 235842723)
[2021-10-28 14:19:11] (resource_pk: 7614603c4ed4cddd6edeeecf3c1a0604_10088_6943_ENV, id: 235842791), (resource_pk: 8b9f0bddc62098d2b3538c02e7e22ecc_10088_6943_ENV, id: 235843300)
[2021-10-28 14:19:11] (resource_pk: 7a75b51f95c4f447ba54570b88947415_10088_6943_ENV, id: 235842889), (resource_pk: 7f5e7a9057c40d23e60aefd06c5665d3_10088_6943_ENV, id: 235843015)
[2021-10-28 14:19:11] (resource_pk: 7e9692eca6e387413f62384542cc73d6_10088_6943_ENV, id: 235842995), (resource_pk: 87035418df27b9417e7cd7f1999ec48a_10088_6943_ENV, id: 235843196)
[2021-10-28 14:19:11] (resource_pk: 8029e3f1b8c9c714258efbf7b47c9ea9_10088_6943_ENV, id: 235843032), (resource_pk: 8842d58d74b5d9130413870177df6c94_10088_6943_ENV, id: 235843222)
[2021-10-28 14:19:11] (resource_pk: 8f93937d5065a0b2ec3664fc5702d092_10088_6943_ENV, id: 235843402), (resource_pk: fbda45d36b57fccace8f1a6595c85c36_10088_6943_ENV, id: 235845962)
[2021-10-28 14:19:11] (resource_pk: 96502dadc4460297868a57c6880deac3_10088_6943_ENV, id: 235843566), (resource_pk: bf496007ee584341873789f3530250ef_10088_6943_ENV, id: 235844593)
[2021-10-28 14:19:11] (resource_pk: 9900d4de819c03514d2dcc3881f4613b_10088_6943_ENV, id: 235843641), (resource_pk: d01149c7761566168786752bd13de966_10088_6943_ENV, id: 235844981)
[2021-10-28 14:19:11] (resource_pk: 9c4699690d532d851e6ecaf22faaaa50_10088_6943_ENV, id: 235843731), (resource_pk: d574953531e81906b9152f294b97c491_10088_6943_ENV, id: 235845113)
[2021-10-28 14:19:11] (resource_pk: cdcafd802a4255d07949463d47fc1df4_10088_6943_ENV, id: 235844934), (resource_pk: e0942aca1b1cea988866b47f3f1024e4_10088_6943_ENV, id: 235845346)
[2021-10-28 14:19:11] (resource_pk: ef56c0a9e7179757f482d71208627ca5_10088_6943_ENV, id: 235845689), (resource_pk: f4ff6bb102074a8a5cb56dee2e246bc2_10088_6943_ENV, id: 235845809)
[STOP] [2021-10-28 14:19:11] calculate_statistics
[START] [2021-10-28 14:19:11] complete_harvest_instance
[START] [2021-10-28 14:19:11] overall_tsv_creation
[INFO] [2021-10-28 14:19:11] Processing group of 1567 in 1 batches of 10000
[INFO] [2021-10-28 14:20:01] 6057 Traits (unfiltered)...
[INFO] [2021-10-28 14:21:26] 6057 Traits (filtered)...
[INFO] [2021-10-28 14:21:26] 0 Associations (filtered)...
[INFO] [2021-10-28 14:21:27] 0 metadata added.
[INFO] [2021-10-28 14:21:27] 0 metadata added.
[INFO] [2021-10-28 14:22:00] Average Time: 137.83
[INFO] [2021-10-28 14:22:00] Total Time: 2m50s
[STOP] [2021-10-28 14:22:00] overall_tsv_creation
[INFO] [2021-10-28 14:22:00] Done. Check your files:
[INFO] [2021-10-28 14:22:01] (1505 lines) /app/public/data/si_contribution2/publish_bibliographic_citations.tsv
[INFO] [2021-10-28 14:22:01] (1567 lines) /app/public/data/si_contribution2/publish_nodes.tsv
[INFO] [2021-10-28 14:22:01] (1567 lines) /app/public/data/si_contribution2/publish_scientific_names.tsv
[INFO] [2021-10-28 14:22:01] (1505 lines) /app/public/data/si_contribution2/publish_articles.tsv
[INFO] [2021-10-28 14:22:02] (1505 lines) /app/public/data/si_contribution2/publish_content_sections.tsv
[INFO] [2021-10-28 14:22:02] (6058 lines) /app/public/data/si_contribution2/publish_traits.tsv
[INFO] [2021-10-28 14:22:02] (1 lines) /app/public/data/si_contribution2/publish_metadata.tsv
[STOP] [2021-10-28 14:22:02] complete_harvest_instance
[START] [2021-10-28 14:22:02] completed
[STOP] [2021-10-28 14:22:02] completed
[STOP] [2021-10-28 14:22:02] logged process, took 263.98
Latest Process