Stage:
completed
Fetched:
02 Jun 08:09
Validated:
02 Jun 08:11
Deltas Created
02 Jun 08:11
Units Normalized:
02 Jun 10:33
Ancestry Built:
02 Jun 09:04
Nodes Matched:
02 Jun 10:30
Names Parsed:
02 Jun 09:06
New Models Stored:
02 Jun 08:57
Indexed:
02 Jun 10:33
Completed:
02 Jun 11:47
Time to Harvest:
4 minutes
Harvesting Log
(263 lines)
[INFO] [2021-06-02 08:09:32] Created harvest instance #3978
[STOP] [2021-06-02 08:09:32] create_harvest_instance
[START] [2021-06-02 08:09:32] fetch_files
[STOP] [2021-06-02 08:09:32] fetch_files
[START] [2021-06-02 08:09:32] validate_each_file
[INFO] [2021-06-02 08:09:32] Looping over 3 formats...
[INFO] [2021-06-02 08:09:32] ...nodes (/app/public/data/gnntrf/taxon.tab)
[INFO] [2021-06-02 08:09:37] Valid: /app/public/converted_csv/gnntrf_nodes_3978.csv (129362 lines)
[INFO] [2021-06-02 08:09:37] ...occurrences (/app/public/data/gnntrf/occurrence.tab)
[INFO] [2021-06-02 08:09:51] Valid: /app/public/converted_csv/gnntrf_occurrences_3978.csv (278853 lines)
[INFO] [2021-06-02 08:09:51] ...measurements (/app/public/data/gnntrf/measurement_or_fact.tab)
[INFO] [2021-06-02 08:11:06] Valid: /app/public/converted_csv/gnntrf_measurements_3978.csv (1941752 lines)
[STOP] [2021-06-02 08:11:06] validate_each_file
[START] [2021-06-02 08:11:06] convert_to_csv
[INFO] [2021-06-02 08:11:06] Looping over 3 formats...
[INFO] [2021-06-02 08:11:06] ...nodes (/app/public/data/gnntrf/taxon.tab)
[CMD] [2021-06-02 08:11:06] /usr/bin/sort /app/public/converted_csv/gnntrf_nodes_3978.csv > /app/public/converted_csv/gnntrf_nodes_3978.csv_sorted
[INFO] [2021-06-02 08:11:07] Converted: /app/public/converted_csv/gnntrf_nodes_3978.csv (129362 lines)
[INFO] [2021-06-02 08:11:07] ...occurrences (/app/public/data/gnntrf/occurrence.tab)
[CMD] [2021-06-02 08:11:07] /usr/bin/sort /app/public/converted_csv/gnntrf_occurrences_3978.csv > /app/public/converted_csv/gnntrf_occurrences_3978.csv_sorted
[INFO] [2021-06-02 08:11:08] Converted: /app/public/converted_csv/gnntrf_occurrences_3978.csv (278853 lines)
[INFO] [2021-06-02 08:11:08] ...measurements (/app/public/data/gnntrf/measurement_or_fact.tab)
[CMD] [2021-06-02 08:11:08] /usr/bin/sort /app/public/converted_csv/gnntrf_measurements_3978.csv > /app/public/converted_csv/gnntrf_measurements_3978.csv_sorted
[INFO] [2021-06-02 08:11:12] Converted: /app/public/converted_csv/gnntrf_measurements_3978.csv (1941752 lines)
[STOP] [2021-06-02 08:11:12] convert_to_csv
[START] [2021-06-02 08:11:12] calculate_delta
[INFO] [2021-06-02 08:11:12] Looping over 3 formats...
[INFO] [2021-06-02 08:11:12] ...nodes (/app/public/data/gnntrf/taxon.tab)
[CMD] [2021-06-02 08:11:12] echo "0a" > /app/public/diff/gnntrf_nodes_3978.diff
[CMD] [2021-06-02 08:11:13] tail -n +1 /app/public/converted_csv/gnntrf_nodes_3978.csv >> /app/public/diff/gnntrf_nodes_3978.diff
[CMD] [2021-06-02 08:11:14] echo "." >> /app/public/diff/gnntrf_nodes_3978.diff
[INFO] [2021-06-02 08:11:15] Created diff: /app/public/diff/gnntrf_nodes_3978.diff (129364 lines)
[INFO] [2021-06-02 08:11:15] ...occurrences (/app/public/data/gnntrf/occurrence.tab)
[CMD] [2021-06-02 08:11:15] echo "0a" > /app/public/diff/gnntrf_occurrences_3978.diff
[CMD] [2021-06-02 08:11:16] tail -n +1 /app/public/converted_csv/gnntrf_occurrences_3978.csv >> /app/public/diff/gnntrf_occurrences_3978.diff
[CMD] [2021-06-02 08:11:17] echo "." >> /app/public/diff/gnntrf_occurrences_3978.diff
[INFO] [2021-06-02 08:11:19] Created diff: /app/public/diff/gnntrf_occurrences_3978.diff (278855 lines)
[INFO] [2021-06-02 08:11:19] ...measurements (/app/public/data/gnntrf/measurement_or_fact.tab)
[CMD] [2021-06-02 08:11:19] echo "0a" > /app/public/diff/gnntrf_measurements_3978.diff
[CMD] [2021-06-02 08:11:20] tail -n +1 /app/public/converted_csv/gnntrf_measurements_3978.csv >> /app/public/diff/gnntrf_measurements_3978.diff
[CMD] [2021-06-02 08:11:22] echo "." >> /app/public/diff/gnntrf_measurements_3978.diff
[INFO] [2021-06-02 08:11:24] Created diff: /app/public/diff/gnntrf_measurements_3978.diff (1941754 lines)
[STOP] [2021-06-02 08:11:24] calculate_delta
[START] [2021-06-02 08:11:24] parse_diff_and_store
[INFO] [2021-06-02 08:11:24] Handling diff: /app/public/diff/gnntrf_nodes_3978.diff (129364 lines)
[INFO] [2021-06-02 08:11:25] Loading nodes diff file into memory (129364 /app/public/diff/gnntrf_nodes_3978.diff lines)...
[WARN] [2021-06-02 08:11:27] Filtered Scientific Name `Acantholipes aurea Berio, 1966/67` to `Acantholipes aurea Berio, 196667`
[WARN] [2021-06-02 08:11:27] Filtered Scientific Name `Acantholipes semiaurea Berio, 1966/67` to `Acantholipes semiaurea Berio, 196667`
[WARN] [2021-06-02 08:11:31] Filtered Scientific Name `Aspidifrontia senegalensis Berio, 1966/67` to `Aspidifrontia senegalensis Berio, 196667`
[WARN] [2021-06-02 08:11:31] Filtered Scientific Name `Athetis improbabilis Berio, 1966/67` to `Athetis improbabilis Berio, 196667`
[WARN] [2021-06-02 08:11:31] Filtered Scientific Name `Athetis perparva Berio, 1966/67` to `Athetis perparva Berio, 196667`
[WARN] [2021-06-02 08:11:38] Filtered Scientific Name `Corgathalia viettei Berio, 1966/67` to `Corgathalia viettei Berio, 196667`
[WARN] [2021-06-02 08:11:44] Filtered Scientific Name `Eublarginea argentifera Berio, 1966/67` to `Eublarginea argentifera Berio, 196667`
[WARN] [2021-06-02 08:11:45] Filtered Scientific Name `Gaedonea rosealutea Berio, 1966/67` to `Gaedonea rosealutea Berio, 196667`
[WARN] [2021-06-02 08:11:46] Filtered Scientific Name `Garella basalis Berio, 1966/67` to `Garella basalis Berio, 196667`
[WARN] [2021-06-02 08:11:50] Filtered Scientific Name `Iambia jansei Berio, 1966/67` to `Iambia jansei Berio, 196667`
[WARN] [2021-06-02 08:11:51] Filtered Scientific Name `Ipermarca monovittata Berio, 1966/67` to `Ipermarca monovittata Berio, 196667`
[WARN] [2021-06-02 08:11:53] Filtered Scientific Name `Lophoptera conspicua Berio, 1956/57` to `Lophoptera conspicua Berio, 195657`
[WARN] [2021-06-02 08:11:54] Filtered Scientific Name `Marcipopsis aureolimbata Berio, 1966/67` to `Marcipopsis aureolimbata Berio, 196667`
[WARN] [2021-06-02 08:11:54] Filtered Scientific Name `Marcipopsis concinna Berio, 1966/67` to `Marcipopsis concinna Berio, 196667`
[WARN] [2021-06-02 08:11:54] Filtered Scientific Name `Marcipopsis proxima Berio, 1966/67` to `Marcipopsis proxima Berio, 196667`
[WARN] [2021-06-02 08:11:54] Filtered Scientific Name `Marcipopsis uniformis Berio, 1966/67` to `Marcipopsis uniformis Berio, 196667`
[WARN] [2021-06-02 08:12:00] Filtered Scientific Name `Parangitia micrina Berio, 1966/67` to `Parangitia micrina Berio, 196667`
[WARN] [2021-06-02 08:12:07] Filtered Scientific Name `Sculptifrontia arcuata Berio, 1966/67` to `Sculptifrontia arcuata Berio, 196667`
[WARN] [2021-06-02 08:12:15] Filtered Scientific Name `Tornoconia royi Berio, 1966/67` to `Tornoconia royi Berio, 196667`
[INFO] [2021-06-02 08:12:17] Handling diff: /app/public/diff/gnntrf_occurrences_3978.diff (278855 lines)
[INFO] [2021-06-02 08:12:19] Loading occurrences diff file into memory (278855 /app/public/diff/gnntrf_occurrences_3978.diff lines)...
[INFO] [2021-06-02 08:15:52] Handling diff: /app/public/diff/gnntrf_measurements_3978.diff (1941754 lines)
[INFO] [2021-06-02 08:15:53] Loading measurements diff file into memory (1941754 /app/public/diff/gnntrf_measurements_3978.diff lines)...
[INFO] [2021-06-02 08:37:05] Storing 157124 ScientificNames
[INFO] [2021-06-02 08:37:05] Processing group of 157124 in 158 groups of 1000
[INFO] [2021-06-02 08:38:24] Average Time: 0.495
[INFO] [2021-06-02 08:38:24] Total Time: 1m20s
[INFO] [2021-06-02 08:38:24] last 3 / first 3: 0.58
[INFO] [2021-06-02 08:38:24] Std.Dev: 0.7509993342207435; Max: 5.69
[INFO] [2021-06-02 08:38:24] Storing 157124 Nodes
[INFO] [2021-06-02 08:38:24] Processing group of 157124 in 158 groups of 1000
[INFO] [2021-06-02 08:39:38] Average Time: 0.462
[INFO] [2021-06-02 08:39:38] Total Time: 1m14s
[INFO] [2021-06-02 08:39:38] last 3 / first 3: 0.44
[INFO] [2021-06-02 08:39:38] Std.Dev: 0.8258329128825032; Max: 6.31
[INFO] [2021-06-02 08:39:38] Storing 278853 Occurrences
[INFO] [2021-06-02 08:39:38] Processing group of 278853 in 279 groups of 1000
[INFO] [2021-06-02 08:41:21] Average Time: 0.364
[INFO] [2021-06-02 08:41:21] Total Time: 1m44s
[INFO] [2021-06-02 08:41:21] last 3 / first 3: 0.31
[INFO] [2021-06-02 08:41:21] Std.Dev: 1.8251027368342858; Max: 21.97
[INFO] [2021-06-02 08:41:21] Storing 1651575 OccurrenceMetadata
[INFO] [2021-06-02 08:41:21] Processing group of 1651575 in 1652 groups of 1000
[INFO] [2021-06-02 08:46:39] Average Time: 0.187
[INFO] [2021-06-02 08:46:39] Total Time: 5m19s
[INFO] [2021-06-02 08:46:39] last 3 / first 3: 1.03
[INFO] [2021-06-02 08:46:39] Std.Dev: 0.4219004621945797; Max: 4.34
[INFO] [2021-06-02 08:46:39] Storing 1105280 Traits
[INFO] [2021-06-02 08:46:39] Processing group of 1105280 in 1106 groups of 1000
[INFO] [2021-06-02 08:56:29] Average Time: 0.527
[INFO] [2021-06-02 08:56:29] Total Time: 9m50s
[INFO] [2021-06-02 08:56:29] last 3 / first 3: 0.76
[INFO] [2021-06-02 08:56:29] Std.Dev: 0.9989994994993742; Max: 8.23
[INFO] [2021-06-02 08:56:29] Storing 274179 MetaTraits
[INFO] [2021-06-02 08:56:29] Processing group of 274179 in 275 groups of 1000
[INFO] [2021-06-02 08:57:19] Average Time: 0.176
[INFO] [2021-06-02 08:57:19] Total Time: 51s
[INFO] [2021-06-02 08:57:19] last 3 / first 3: 0.72
[INFO] [2021-06-02 08:57:19] Std.Dev: 0.1; Max: 0.58
[STOP] [2021-06-02 08:57:19] parse_diff_and_store
[START] [2021-06-02 08:57:19] resolve_keys
[INFO] [2021-06-02 08:58:42] Occurrences to nodes (through scientific_names)...
[INFO] [2021-06-02 08:59:19] traits to occurrences...
[INFO] [2021-06-02 08:59:31] traits to nodes (through occurrences)...
[INFO] [2021-06-02 08:59:39] Traits to sex term...
[INFO] [2021-06-02 08:59:45] Traits to lifestage term...
[INFO] [2021-06-02 08:59:50] MetaTraits to traits...
[INFO] [2021-06-02 08:59:57] MetaTraits (simple, measurement row refers to parent) to traits...
[INFO] [2021-06-02 09:00:24] Assocs to occurrences...
[INFO] [2021-06-02 09:00:24] Assocs to nodes...
[INFO] [2021-06-02 09:00:24] Assoc to sex term...
[INFO] [2021-06-02 09:00:25] Assoc to lifestage term...
[INFO] [2021-06-02 09:00:25] MetaAssoc to assocs...
[STOP] [2021-06-02 09:00:25] resolve_keys
[START] [2021-06-02 09:00:25] hold_for_later_1
[STOP] [2021-06-02 09:00:25] hold_for_later_1
[START] [2021-06-02 09:00:25] hold_for_later_2
[STOP] [2021-06-02 09:00:25] hold_for_later_2
[START] [2021-06-02 09:00:25] resolve_missing_parents
[STOP] [2021-06-02 09:00:29] resolve_missing_parents
[START] [2021-06-02 09:00:29] rebuild_nodes
[START] [2021-06-02 09:00:29] Flattener#flatten
[START] [2021-06-02 09:00:29] Flattener#study_resource
[START] [2021-06-02 09:00:59] Flattener#build_ancestry
[STOP] [2021-06-02 09:02:40] Flattener#build_ancestry
[INFO] [2021-06-02 09:02:40] 157124 ancestry keys
[START] [2021-06-02 09:02:40] build_node_ancestors
[INFO] [2021-06-02 09:02:40] old ancestors deleted.
[STOP] [2021-06-02 09:04:05] build_node_ancestors
[START] [2021-06-02 09:04:11] Flattener#propagate_ancestor_ids
[STOP] [2021-06-02 09:04:32] Flattener#propagate_ancestor_ids
[STOP] [2021-06-02 09:04:32] Flattener#flatten
[STOP] [2021-06-02 09:04:32] rebuild_nodes
[START] [2021-06-02 09:04:32] resolve_missing_media_owners
[STOP] [2021-06-02 09:04:32] resolve_missing_media_owners
[START] [2021-06-02 09:04:32] sanitize_media_verbatims
[STOP] [2021-06-02 09:04:32] sanitize_media_verbatims
[START] [2021-06-02 09:04:32] queue_downloads
[STOP] [2021-06-02 09:04:32] queue_downloads
[START] [2021-06-02 09:04:32] parse_names
[WARN] [2021-06-02 09:04:33] I see 157124 names which still need to be parsed.
[WARN] [2021-06-02 09:06:33] I see 173 names which still need to be parsed.
[WARN] [2021-06-02 09:06:34] I see 2 names which still need to be parsed.
[STOP] [2021-06-02 09:06:36] parse_names
[START] [2021-06-02 09:06:36] denormalize_canonical_names_to_nodes
[STOP] [2021-06-02 09:06:38] denormalize_canonical_names_to_nodes
[START] [2021-06-02 09:06:38] match_nodes
[START] [2021-06-02 09:06:39] map_all_nodes_to_pages
[STOP] [2021-06-02 10:30:05] map_all_nodes_to_pages
[INFO] [2021-06-02 10:30:06] 12962 Unmatched nodes (of 157124)! That's too many to output. Full list in /app/public/data/gnntrf/unmatched_nodes.txt ; First 10: Canonical: Erigeron acris fuscomarginatus; Node#95501558; ResourceID: Erigeron_acris_fuscomarginatus; Canonical: Erigeron bonariensis grisea; Node#95501571; ResourceID: Erigeron_bonariensis_grisea; Canonical: Erigeron heteromorphus; Node#95501596; ResourceID: Erigeron_heteromorphus; Canonical: Erigeron pulcherrimus; Node#95501630; ResourceID: Erigeron_pulcherrimus; Canonical: Erigeron schultzii; Node#95501635; ResourceID: Erigeron_schultzii; Canonical: Achillea spithamea major; Node#95446438; ResourceID: Achillea_spithamea_major; Canonical: Gnaphalium luteoalbum incanum; Node#95512158; ResourceID: Gnaphalium_luteoalbum_incanum; Canonical: Helichrysum lacteum maroccanum; Node#95516188; ResourceID: Helichrysum_lacteum_maroccanum; Canonical: Helichrysum rupestre jorroi; Node#95516262; ResourceID: Helichrysum_rupestre_jorroi; Canonical: Hypochaeris radicata erostris; Node#95521766; ResourceID: Hypochaeris_radicata_erostris
[START] [2021-06-02 10:30:06] update_nodes
[STOP] [2021-06-02 10:30:29] update_nodes
[STOP] [2021-06-02 10:30:29] match_nodes
[START] [2021-06-02 10:30:29] reindex_search
[STOP] [2021-06-02 10:33:00] reindex_search
[START] [2021-06-02 10:33:00] normalize_units
[STOP] [2021-06-02 10:33:27] normalize_units
[START] [2021-06-02 10:33:27] calculate_statistics
[STOP] [2021-06-02 10:33:34] calculate_statistics
[START] [2021-06-02 10:33:34] complete_harvest_instance
[START] [2021-06-02 10:33:34] overall_tsv_creation
[INFO] [2021-06-02 10:33:34] Processing group of 157124 in 16 batches of 10000
[INFO] [2021-06-02 10:35:34] 18250 Traits (unfiltered)...
[INFO] [2021-06-02 10:38:01] 18250 Traits (filtered)...
[INFO] [2021-06-02 10:38:04] 0 Associations (filtered)...
[INFO] [2021-06-02 10:38:20] 163218 metadata added.
[INFO] [2021-06-02 10:38:20] 0 metadata added.
[INFO] [2021-06-02 10:40:06] 17067 Traits (unfiltered)...
[INFO] [2021-06-02 10:42:29] 17067 Traits (filtered)...
[INFO] [2021-06-02 10:42:32] 0 Associations (filtered)...
[INFO] [2021-06-02 10:42:51] 149218 metadata added.
[INFO] [2021-06-02 10:42:51] 0 metadata added.
[INFO] [2021-06-02 10:44:39] 18313 Traits (unfiltered)...
[INFO] [2021-06-02 10:47:10] 18313 Traits (filtered)...
[INFO] [2021-06-02 10:47:12] 0 Associations (filtered)...
[INFO] [2021-06-02 10:47:32] 158796 metadata added.
[INFO] [2021-06-02 10:47:32] 0 metadata added.
[INFO] [2021-06-02 10:49:20] 16231 Traits (unfiltered)...
[INFO] [2021-06-02 10:51:39] 16231 Traits (filtered)...
[INFO] [2021-06-02 10:51:42] 0 Associations (filtered)...
[INFO] [2021-06-02 10:52:00] 141399 metadata added.
[INFO] [2021-06-02 10:52:00] 0 metadata added.
[INFO] [2021-06-02 10:53:46] 17696 Traits (unfiltered)...
[INFO] [2021-06-02 10:56:11] 17696 Traits (filtered)...
[INFO] [2021-06-02 10:56:14] 0 Associations (filtered)...
[INFO] [2021-06-02 10:56:33] 155686 metadata added.
[INFO] [2021-06-02 10:56:33] 0 metadata added.
[INFO] [2021-06-02 10:58:23] 16532 Traits (unfiltered)...
[INFO] [2021-06-02 11:00:43] 16532 Traits (filtered)...
[INFO] [2021-06-02 11:00:45] 0 Associations (filtered)...
[INFO] [2021-06-02 11:01:04] 144864 metadata added.
[INFO] [2021-06-02 11:01:04] 0 metadata added.
[INFO] [2021-06-02 11:02:50] 18925 Traits (unfiltered)...
[INFO] [2021-06-02 11:05:23] 18925 Traits (filtered)...
[INFO] [2021-06-02 11:05:26] 0 Associations (filtered)...
[INFO] [2021-06-02 11:05:46] 169582 metadata added.
[INFO] [2021-06-02 11:05:46] 0 metadata added.
[INFO] [2021-06-02 11:07:35] 17644 Traits (unfiltered)...
[INFO] [2021-06-02 11:10:02] 17644 Traits (filtered)...
[INFO] [2021-06-02 11:10:05] 0 Associations (filtered)...
[INFO] [2021-06-02 11:10:24] 154053 metadata added.
[INFO] [2021-06-02 11:10:24] 0 metadata added.
[INFO] [2021-06-02 11:12:12] 18229 Traits (unfiltered)...
[INFO] [2021-06-02 11:14:46] 18229 Traits (filtered)...
[INFO] [2021-06-02 11:14:49] 0 Associations (filtered)...
[INFO] [2021-06-02 11:15:09] 160260 metadata added.
[INFO] [2021-06-02 11:15:09] 0 metadata added.
[INFO] [2021-06-02 11:16:55] 17709 Traits (unfiltered)...
[INFO] [2021-06-02 11:19:21] 17709 Traits (filtered)...
[INFO] [2021-06-02 11:19:24] 0 Associations (filtered)...
[INFO] [2021-06-02 11:19:44] 157872 metadata added.
[INFO] [2021-06-02 11:19:44] 0 metadata added.
[INFO] [2021-06-02 11:21:31] 17919 Traits (unfiltered)...
[INFO] [2021-06-02 11:23:57] 17919 Traits (filtered)...
[INFO] [2021-06-02 11:24:00] 0 Associations (filtered)...
[INFO] [2021-06-02 11:24:19] 161088 metadata added.
[INFO] [2021-06-02 11:24:19] 0 metadata added.
[INFO] [2021-06-02 11:26:08] 16998 Traits (unfiltered)...
[INFO] [2021-06-02 11:28:30] 16998 Traits (filtered)...
[INFO] [2021-06-02 11:28:33] 0 Associations (filtered)...
[INFO] [2021-06-02 11:28:51] 148293 metadata added.
[INFO] [2021-06-02 11:28:51] 0 metadata added.
[INFO] [2021-06-02 11:30:38] 17519 Traits (unfiltered)...
[INFO] [2021-06-02 11:33:06] 17519 Traits (filtered)...
[INFO] [2021-06-02 11:33:09] 0 Associations (filtered)...
[INFO] [2021-06-02 11:33:28] 154412 metadata added.
[INFO] [2021-06-02 11:33:28] 0 metadata added.
[INFO] [2021-06-02 11:35:18] 18106 Traits (unfiltered)...
[INFO] [2021-06-02 11:37:51] 18106 Traits (filtered)...
[INFO] [2021-06-02 11:37:54] 0 Associations (filtered)...
[INFO] [2021-06-02 11:38:13] 156289 metadata added.
[INFO] [2021-06-02 11:38:13] 0 metadata added.
[INFO] [2021-06-02 11:40:04] 17538 Traits (unfiltered)...
[INFO] [2021-06-02 11:42:30] 17538 Traits (filtered)...
[INFO] [2021-06-02 11:42:33] 0 Associations (filtered)...
[INFO] [2021-06-02 11:42:52] 153446 metadata added.
[INFO] [2021-06-02 11:42:52] 0 metadata added.
[INFO] [2021-06-02 11:44:28] 14177 Traits (unfiltered)...
[INFO] [2021-06-02 11:46:33] 14177 Traits (filtered)...
[INFO] [2021-06-02 11:46:36] 0 Associations (filtered)...
[INFO] [2021-06-02 11:46:51] 125268 metadata added.
[INFO] [2021-06-02 11:46:51] 0 metadata added.
[INFO] [2021-06-02 11:47:21] Average Time: 239.847
[INFO] [2021-06-02 11:47:21] Total Time: 1h13m47s
[INFO] [2021-06-02 11:47:21] last 3 / first 3: 0.97
[INFO] [2021-06-02 11:47:21] Std.Dev: 11.208835800385337; Max: 253.34
[STOP] [2021-06-02 11:47:21] overall_tsv_creation
[INFO] [2021-06-02 11:47:21] Done. Check your files:
[INFO] [2021-06-02 11:47:22] (154945 lines) /app/public/data/gnntrf/publish_nodes.tsv
[INFO] [2021-06-02 11:47:23] (884038 lines) /app/public/data/gnntrf/publish_node_ancestors.tsv
[INFO] [2021-06-02 11:47:24] (157124 lines) /app/public/data/gnntrf/publish_scientific_names.tsv
[INFO] [2021-06-02 11:47:25] (278854 lines) /app/public/data/gnntrf/publish_traits.tsv
[INFO] [2021-06-02 11:47:26] (2453745 lines) /app/public/data/gnntrf/publish_metadata.tsv
[STOP] [2021-06-02 11:47:27] complete_harvest_instance
[START] [2021-06-02 11:47:27] completed
[STOP] [2021-06-02 11:47:27] completed
[STOP] [2021-06-02 11:47:27] logged process, took 13075.8
Latest Process