Harvest for Fish 2000 Created 23 Jul 11:13

Harvesting Log

# Logfile created on 2020-07-22 15:28:58 -0400 by logger.rb/v1.4.2
[START] [2020-07-22 15:28:58] logged process
[START] [2020-07-22 15:28:58] Creating resource from OpenData
[START] [2020-07-22 15:28:59] logged process
[START] [2020-07-22 15:28:59] Parse meta.xml file and create formats with fields
[STOP] [2020-07-22 15:28:59] Parse meta.xml file and create formats with fields
[STOP] [2020-07-22 15:28:59] Creating resource from OpenData
[INFO] [2020-07-22 15:42:47] ## HARVEST: type = -harvest
[START] [2020-07-22 15:42:52] logged process
[START] [2020-07-22 15:42:52] create_harvest_instance
[STOP] [2020-07-22 15:42:53] create_harvest_instance
[START] [2020-07-22 15:42:53] fetch_files
[STOP] [2020-07-22 15:42:53] fetch_files
[START] [2020-07-22 15:42:53] validate_each_file
[STOP] [2020-07-22 15:42:53] validate_each_file
[START] [2020-07-22 15:42:53] convert_to_csv
[CMD] [2020-07-22 15:42:53] /usr/bin/sort /app/public/converted_csv/fish_fish_2000_nodes_22114.csv > /app/public/converted_csv/fish_fish_2000_nodes_22114.csv_sorted
[CMD] [2020-07-22 15:42:53] /usr/bin/sort /app/public/converted_csv/fish_fish_2000_occurrences_22115.csv > /app/public/converted_csv/fish_fish_2000_occurrences_22115.csv_sorted
[CMD] [2020-07-22 15:42:53] /usr/bin/sort /app/public/converted_csv/fish_fish_2000_measurements_22116.csv > /app/public/converted_csv/fish_fish_2000_measurements_22116.csv_sorted
[STOP] [2020-07-22 15:42:53] convert_to_csv
[START] [2020-07-22 15:42:53] calculate_delta
[CMD] [2020-07-22 15:42:53] echo "0a" > /app/public/diff/fish_fish_2000_nodes_22114.diff
[CMD] [2020-07-22 15:42:53] tail -n +1 /app/public/converted_csv/fish_fish_2000_nodes_22114.csv >> /app/public/diff/fish_fish_2000_nodes_22114.diff
[CMD] [2020-07-22 15:42:53] echo "." >> /app/public/diff/fish_fish_2000_nodes_22114.diff
[CMD] [2020-07-22 15:42:53] echo "0a" > /app/public/diff/fish_fish_2000_occurrences_22115.diff
[CMD] [2020-07-22 15:42:53] tail -n +1 /app/public/converted_csv/fish_fish_2000_occurrences_22115.csv >> /app/public/diff/fish_fish_2000_occurrences_22115.diff
[CMD] [2020-07-22 15:42:53] echo "." >> /app/public/diff/fish_fish_2000_occurrences_22115.diff
[CMD] [2020-07-22 15:42:53] echo "0a" > /app/public/diff/fish_fish_2000_measurements_22116.diff
[CMD] [2020-07-22 15:42:53] tail -n +1 /app/public/converted_csv/fish_fish_2000_measurements_22116.csv >> /app/public/diff/fish_fish_2000_measurements_22116.diff
[CMD] [2020-07-22 15:42:53] echo "." >> /app/public/diff/fish_fish_2000_measurements_22116.diff
[STOP] [2020-07-22 15:42:53] calculate_delta
[START] [2020-07-22 15:42:53] parse_diff_and_store
[INFO] [2020-07-22 15:42:53] Loading nodes diff file into memory (true lines)...
[INFO] [2020-07-22 15:42:53] Loading occurrences diff file into memory (true lines)...
[INFO] [2020-07-22 15:42:53] Loading measurements diff file into memory (true lines)...
[INFO] [2020-07-22 15:42:53] Storing 13 ScientificNames
[INFO] [2020-07-22 15:42:53] Processing group of 13 in 1 groups of 1000
[INFO] [2020-07-22 15:42:53] Average Time: 0.01
[INFO] [2020-07-22 15:42:53] Total Time: 1s
[INFO] [2020-07-22 15:42:53] Storing 13 Nodes
[INFO] [2020-07-22 15:42:53] Processing group of 13 in 1 groups of 1000
[INFO] [2020-07-22 15:42:53] Average Time: 0.01
[INFO] [2020-07-22 15:42:53] Total Time: 1s
[INFO] [2020-07-22 15:42:53] Storing 13 Occurrences
[INFO] [2020-07-22 15:42:53] Processing group of 13 in 1 groups of 1000
[INFO] [2020-07-22 15:42:53] Average Time: 0.0
[INFO] [2020-07-22 15:42:53] Total Time: 1s
[INFO] [2020-07-22 15:42:53] Storing 28 Traits
[INFO] [2020-07-22 15:42:53] Processing group of 28 in 1 groups of 1000
[INFO] [2020-07-22 15:42:53] Average Time: 0.01
[INFO] [2020-07-22 15:42:53] Total Time: 1s
[INFO] [2020-07-22 15:42:53] Storing 51 MetaTraits
[INFO] [2020-07-22 15:42:53] Processing group of 51 in 1 groups of 1000
[INFO] [2020-07-22 15:42:53] Average Time: 0.01
[INFO] [2020-07-22 15:42:53] Total Time: 1s
[STOP] [2020-07-22 15:42:53] parse_diff_and_store
[START] [2020-07-22 15:42:53] resolve_keys
[INFO] [2020-07-22 15:43:00] Occurrences to nodes (through scientific_names)...
[INFO] [2020-07-22 15:43:00] traits to occurrences...
[INFO] [2020-07-22 15:43:00] traits to nodes (through occurrences)...
[INFO] [2020-07-22 15:43:00] Traits to sex term...
[INFO] [2020-07-22 15:43:00] Traits to lifestage term...
[INFO] [2020-07-22 15:43:00] MetaTraits to traits...
[INFO] [2020-07-22 15:43:00] MetaTraits (simple, measurement row refers to parent) to traits...
[INFO] [2020-07-22 15:43:00] Assocs to occurrences...
[INFO] [2020-07-22 15:43:00] Assocs to nodes...
[INFO] [2020-07-22 15:43:00] Assoc to sex term...
[INFO] [2020-07-22 15:43:00] Assoc to lifestage term...
[STOP] [2020-07-22 15:43:00] resolve_keys
[START] [2020-07-22 15:43:00] hold_for_later_1
[STOP] [2020-07-22 15:43:00] hold_for_later_1
[START] [2020-07-22 15:43:00] hold_for_later_2
[STOP] [2020-07-22 15:43:00] hold_for_later_2
[START] [2020-07-22 15:43:00] resolve_missing_parents
[STOP] [2020-07-22 15:43:00] resolve_missing_parents
[START] [2020-07-22 15:43:00] rebuild_nodes
[START] [2020-07-22 15:43:00] Flattener#flatten
[START] [2020-07-22 15:43:00] Flattener#study_resource
[START] [2020-07-22 15:43:00] Flattener#build_ancestry
[STOP] [2020-07-22 15:43:00] Flattener#build_ancestry
[INFO] [2020-07-22 15:43:00] 13 ancestry keys
[START] [2020-07-22 15:43:00] build_node_ancestors
[INFO] [2020-07-22 15:43:00] old ancestors deleted.
[STOP] [2020-07-22 15:43:00] build_node_ancestors
[WARN] [2020-07-22 15:43:00] Flattener: nothing to flatten! (Completely flat resource?)
[STOP] [2020-07-22 15:43:00] Flattener#flatten
[STOP] [2020-07-22 15:43:00] rebuild_nodes
[START] [2020-07-22 15:43:00] resolve_missing_media_owners
[STOP] [2020-07-22 15:43:00] resolve_missing_media_owners
[START] [2020-07-22 15:43:00] sanitize_media_verbatims
[STOP] [2020-07-22 15:43:00] sanitize_media_verbatims
[START] [2020-07-22 15:43:00] queue_downloads
[STOP] [2020-07-22 15:43:00] queue_downloads
[START] [2020-07-22 15:43:00] parse_names
[WARN] [2020-07-22 15:43:00] I see 13 names which still need to be parsed.
[STOP] [2020-07-22 15:43:01] parse_names
[START] [2020-07-22 15:43:01] denormalize_canonical_names_to_nodes
[STOP] [2020-07-22 15:43:01] denormalize_canonical_names_to_nodes
[START] [2020-07-22 15:43:01] match_nodes
[START] [2020-07-22 15:43:01] map_all_nodes_to_pages
[STOP] [2020-07-22 15:43:01] map_all_nodes_to_pages
[INFO] [2020-07-22 15:43:01] ZERO unmatched nodes (of 13)! Nicely done.
[START] [2020-07-22 15:43:01] update_nodes
[STOP] [2020-07-22 15:43:01] update_nodes
[STOP] [2020-07-22 15:43:01] match_nodes
[START] [2020-07-22 15:43:01] reindex_search
[STOP] [2020-07-22 15:43:01] reindex_search
[START] [2020-07-22 15:43:01] normalize_units
[STOP] [2020-07-22 15:43:01] normalize_units
[START] [2020-07-22 15:43:01] calculate_statistics
[2020-07-22 15:43:01] ZERO NODE ANCESTORS. Is this actually a completely flat resource?
[STOP] [2020-07-22 15:43:01] calculate_statistics
[START] [2020-07-22 15:43:01] complete_harvest_instance
[START] [2020-07-22 15:43:01] overall_tsv_creation
[INFO] [2020-07-22 15:43:01] Processing group of 13 in 1 batches of 10000
[INFO] [2020-07-22 15:43:51] 23 Traits (unfiltered)...
[INFO] [2020-07-22 15:44:27] 23 Traits (filtered)...
[INFO] [2020-07-22 15:44:27] 0 Associations (filtered)...
[INFO] [2020-07-22 15:44:27] 56 metadata added.
[INFO] [2020-07-22 15:44:27] 0 metadata added.
[INFO] [2020-07-22 15:44:27] Average Time: 58.1
[INFO] [2020-07-22 15:44:27] Total Time: 1m26s
[STOP] [2020-07-22 15:44:27] overall_tsv_creation
[INFO] [2020-07-22 15:44:27] Done. Check your files:
[INFO] [2020-07-22 15:44:27] (13 lines) /app/public/data/fish_fish_2000/publish_nodes.tsv
[INFO] [2020-07-22 15:44:27] (13 lines) /app/public/data/fish_fish_2000/publish_scientific_names.tsv
[INFO] [2020-07-22 15:44:27] (24 lines) /app/public/data/fish_fish_2000/publish_traits.tsv
[INFO] [2020-07-22 15:44:27] (6 lines) /app/public/data/fish_fish_2000/publish_metadata.tsv
[STOP] [2020-07-22 15:44:27] complete_harvest_instance
[START] [2020-07-22 15:44:27] completed
[STOP] [2020-07-22 15:44:27] completed
[STOP] [2020-07-22 15:44:27] logged process, took 95.48
[INFO] [2020-07-23 11:13:19] ## HARVEST: type = re_download_opendata_-harvest
[INFO] [2020-07-23 11:13:21] ## remove_type: ScientificName
[INFO] [2020-07-23 11:13:21] ++ Calling delete_all on 13 instances...
[INFO] [2020-07-23 11:13:21] [11:13:21.206] Removed 13 Scientificnames
[INFO] [2020-07-23 11:13:21] ## remove_type: Vernacular
[INFO] [2020-07-23 11:13:21] ++ Calling delete_all on 0 instances...
[INFO] [2020-07-23 11:13:21] [11:13:21.209] Removed 0 Vernaculars
[INFO] [2020-07-23 11:13:21] ## remove_type: Article
[INFO] [2020-07-23 11:13:21] ++ Calling delete_all on 0 instances...
[INFO] [2020-07-23 11:13:21] [11:13:21.212] Removed 0 Articles
[INFO] [2020-07-23 11:13:21] ## remove_type: Medium
[INFO] [2020-07-23 11:13:21] ++ Calling delete_all on 0 instances...
[INFO] [2020-07-23 11:13:21] [11:13:21.216] Removed 0 Media
[INFO] [2020-07-23 11:13:21] ## remove_type: Trait
[INFO] [2020-07-23 11:13:21] ++ Calling delete_all on 28 instances...
[INFO] [2020-07-23 11:13:21] [11:13:21.221] Removed 28 Traits
[INFO] [2020-07-23 11:13:21] ## remove_type: MetaTrait
[INFO] [2020-07-23 11:13:21] ++ Calling delete_all on 51 instances...
[INFO] [2020-07-23 11:13:21] [11:13:21.225] Removed 51 Metatraits
[INFO] [2020-07-23 11:13:21] ## remove_type: OccurrenceMetadatum
[INFO] [2020-07-23 11:13:21] ++ Calling delete_all on 0 instances...
[INFO] [2020-07-23 11:13:21] [11:13:21.227] Removed 0 Occurrencemetadata
[INFO] [2020-07-23 11:13:21] ## remove_type: Assoc
[INFO] [2020-07-23 11:13:21] ++ Calling delete_all on 0 instances...
[INFO] [2020-07-23 11:13:21] [11:13:21.230] Removed 0 Assocs
[INFO] [2020-07-23 11:13:21] ## remove_type: MetaAssoc
[INFO] [2020-07-23 11:13:21] ++ Calling delete_all on 0 instances...
[INFO] [2020-07-23 11:13:21] [11:13:21.232] Removed 0 Metaassocs
[INFO] [2020-07-23 11:13:21] ## remove_type: Identifier
[INFO] [2020-07-23 11:13:21] ++ Calling delete_all on 0 instances...
[INFO] [2020-07-23 11:13:21] [11:13:21.235] Removed 0 Identifiers
[INFO] [2020-07-23 11:13:21] ## remove_type: Reference
[INFO] [2020-07-23 11:13:21] ++ Calling delete_all on 0 instances...
[INFO] [2020-07-23 11:13:21] [11:13:21.238] Removed 0 References
[INFO] [2020-07-23 11:13:21] Starting batch with ID 80633672...
[INFO] [2020-07-23 11:13:21] Starting batch with ID 80633672...
[INFO] [2020-07-23 11:13:21] Starting batch with ID 80633672...
[INFO] [2020-07-23 11:13:21] Starting batch with ID 80633672...
[INFO] [2020-07-23 11:13:21] Starting batch with ID 80633672...
[INFO] [2020-07-23 11:13:21] Starting batch with ID 80633672...
[INFO] [2020-07-23 11:13:21] Starting batch with ID 80633672...
[INFO] [2020-07-23 11:13:21] Starting batch with ID 80633672...
[INFO] [2020-07-23 11:13:21] Starting batch with ID 80633672...
[INFO] [2020-07-23 11:13:21] Starting batch with ID 80633672...
[INFO] [2020-07-23 11:13:21] ## remove_type: Node
[INFO] [2020-07-23 11:13:21] ++ Calling delete_all on 13 instances...
[INFO] [2020-07-23 11:13:21] [11:13:21.771] Removed 13 Nodes
[START] [2020-07-23 11:13:22] logged process
[START] [2020-07-23 11:13:22] Creating resource from OpenData
[START] [2020-07-23 11:13:22] logged process
[START] [2020-07-23 11:13:22] Parse meta.xml file and create formats with fields
[STOP] [2020-07-23 11:13:22] Parse meta.xml file and create formats with fields
[STOP] [2020-07-23 11:13:22] Creating resource from OpenData
[START] [2020-07-23 11:13:22] logged process
[START] [2020-07-23 11:13:22] create_harvest_instance
[STOP] [2020-07-23 11:13:23] create_harvest_instance
[START] [2020-07-23 11:13:23] fetch_files
[STOP] [2020-07-23 11:13:23] fetch_files
[START] [2020-07-23 11:13:23] validate_each_file
[STOP] [2020-07-23 11:13:23] validate_each_file
[START] [2020-07-23 11:13:23] convert_to_csv
[CMD] [2020-07-23 11:13:23] /usr/bin/sort /app/public/converted_csv/fish_fish_2000_nodes_22129.csv > /app/public/converted_csv/fish_fish_2000_nodes_22129.csv_sorted
[CMD] [2020-07-23 11:13:23] /usr/bin/sort /app/public/converted_csv/fish_fish_2000_occurrences_22130.csv > /app/public/converted_csv/fish_fish_2000_occurrences_22130.csv_sorted
[CMD] [2020-07-23 11:13:23] /usr/bin/sort /app/public/converted_csv/fish_fish_2000_measurements_22131.csv > /app/public/converted_csv/fish_fish_2000_measurements_22131.csv_sorted
[STOP] [2020-07-23 11:13:23] convert_to_csv
[START] [2020-07-23 11:13:23] calculate_delta
[CMD] [2020-07-23 11:13:23] echo "0a" > /app/public/diff/fish_fish_2000_nodes_22129.diff
[CMD] [2020-07-23 11:13:23] tail -n +1 /app/public/converted_csv/fish_fish_2000_nodes_22129.csv >> /app/public/diff/fish_fish_2000_nodes_22129.diff
[CMD] [2020-07-23 11:13:23] echo "." >> /app/public/diff/fish_fish_2000_nodes_22129.diff
[CMD] [2020-07-23 11:13:23] echo "0a" > /app/public/diff/fish_fish_2000_occurrences_22130.diff
[CMD] [2020-07-23 11:13:23] tail -n +1 /app/public/converted_csv/fish_fish_2000_occurrences_22130.csv >> /app/public/diff/fish_fish_2000_occurrences_22130.diff
[CMD] [2020-07-23 11:13:23] echo "." >> /app/public/diff/fish_fish_2000_occurrences_22130.diff
[CMD] [2020-07-23 11:13:23] echo "0a" > /app/public/diff/fish_fish_2000_measurements_22131.diff
[CMD] [2020-07-23 11:13:23] tail -n +1 /app/public/converted_csv/fish_fish_2000_measurements_22131.csv >> /app/public/diff/fish_fish_2000_measurements_22131.diff
[CMD] [2020-07-23 11:13:23] echo "." >> /app/public/diff/fish_fish_2000_measurements_22131.diff
[STOP] [2020-07-23 11:13:23] calculate_delta
[START] [2020-07-23 11:13:23] parse_diff_and_store
[INFO] [2020-07-23 11:13:23] Loading nodes diff file into memory (true lines)...
[INFO] [2020-07-23 11:13:23] Loading occurrences diff file into memory (true lines)...
[INFO] [2020-07-23 11:13:23] Loading measurements diff file into memory (true lines)...
[INFO] [2020-07-23 11:13:23] Storing 13 ScientificNames
[INFO] [2020-07-23 11:13:23] Processing group of 13 in 1 groups of 1000
[INFO] [2020-07-23 11:13:23] Average Time: 0.01
[INFO] [2020-07-23 11:13:23] Total Time: 1s
[INFO] [2020-07-23 11:13:23] Storing 13 Nodes
[INFO] [2020-07-23 11:13:23] Processing group of 13 in 1 groups of 1000
[INFO] [2020-07-23 11:13:23] Average Time: 0.0
[INFO] [2020-07-23 11:13:23] Total Time: 1s
[INFO] [2020-07-23 11:13:23] Storing 13 Occurrences
[INFO] [2020-07-23 11:13:23] Processing group of 13 in 1 groups of 1000
[INFO] [2020-07-23 11:13:23] Average Time: 0.0
[INFO] [2020-07-23 11:13:23] Total Time: 1s
[INFO] [2020-07-23 11:13:23] Storing 28 Traits
[INFO] [2020-07-23 11:13:23] Processing group of 28 in 1 groups of 1000
[INFO] [2020-07-23 11:13:23] Average Time: 0.01
[INFO] [2020-07-23 11:13:23] Total Time: 1s
[INFO] [2020-07-23 11:13:23] Storing 51 MetaTraits
[INFO] [2020-07-23 11:13:23] Processing group of 51 in 1 groups of 1000
[INFO] [2020-07-23 11:13:23] Average Time: 0.01
[INFO] [2020-07-23 11:13:23] Total Time: 1s
[STOP] [2020-07-23 11:13:23] parse_diff_and_store
[START] [2020-07-23 11:13:23] resolve_keys
[INFO] [2020-07-23 11:13:31] Occurrences to nodes (through scientific_names)...
[INFO] [2020-07-23 11:13:31] traits to occurrences...
[INFO] [2020-07-23 11:13:31] traits to nodes (through occurrences)...
[INFO] [2020-07-23 11:13:31] Traits to sex term...
[INFO] [2020-07-23 11:13:31] Traits to lifestage term...
[INFO] [2020-07-23 11:13:31] MetaTraits to traits...
[INFO] [2020-07-23 11:13:31] MetaTraits (simple, measurement row refers to parent) to traits...
[INFO] [2020-07-23 11:13:31] Assocs to occurrences...
[INFO] [2020-07-23 11:13:31] Assocs to nodes...
[INFO] [2020-07-23 11:13:31] Assoc to sex term...
[INFO] [2020-07-23 11:13:31] Assoc to lifestage term...
[STOP] [2020-07-23 11:13:31] resolve_keys
[START] [2020-07-23 11:13:31] hold_for_later_1
[STOP] [2020-07-23 11:13:31] hold_for_later_1
[START] [2020-07-23 11:13:31] hold_for_later_2
[STOP] [2020-07-23 11:13:31] hold_for_later_2
[START] [2020-07-23 11:13:31] resolve_missing_parents
[STOP] [2020-07-23 11:13:31] resolve_missing_parents
[START] [2020-07-23 11:13:31] rebuild_nodes
[START] [2020-07-23 11:13:31] Flattener#flatten
[START] [2020-07-23 11:13:31] Flattener#study_resource
[START] [2020-07-23 11:13:31] Flattener#build_ancestry
[STOP] [2020-07-23 11:13:31] Flattener#build_ancestry
[INFO] [2020-07-23 11:13:31] 13 ancestry keys
[START] [2020-07-23 11:13:31] build_node_ancestors
[INFO] [2020-07-23 11:13:31] old ancestors deleted.
[STOP] [2020-07-23 11:13:31] build_node_ancestors
[WARN] [2020-07-23 11:13:31] Flattener: nothing to flatten! (Completely flat resource?)
[STOP] [2020-07-23 11:13:31] Flattener#flatten
[STOP] [2020-07-23 11:13:31] rebuild_nodes
[START] [2020-07-23 11:13:31] resolve_missing_media_owners
[STOP] [2020-07-23 11:13:31] resolve_missing_media_owners
[START] [2020-07-23 11:13:31] sanitize_media_verbatims
[STOP] [2020-07-23 11:13:31] sanitize_media_verbatims
[START] [2020-07-23 11:13:31] queue_downloads
[STOP] [2020-07-23 11:13:31] queue_downloads
[START] [2020-07-23 11:13:31] parse_names
[WARN] [2020-07-23 11:13:31] I see 13 names which still need to be parsed.
[STOP] [2020-07-23 11:13:32] parse_names
[START] [2020-07-23 11:13:32] denormalize_canonical_names_to_nodes
[STOP] [2020-07-23 11:13:32] denormalize_canonical_names_to_nodes
[START] [2020-07-23 11:13:32] match_nodes
[START] [2020-07-23 11:13:32] map_all_nodes_to_pages
[STOP] [2020-07-23 11:13:33] map_all_nodes_to_pages
[INFO] [2020-07-23 11:13:33] ZERO unmatched nodes (of 13)! Nicely done.
[START] [2020-07-23 11:13:33] update_nodes
[STOP] [2020-07-23 11:13:33] update_nodes
[STOP] [2020-07-23 11:13:33] match_nodes
[START] [2020-07-23 11:13:33] reindex_search
[STOP] [2020-07-23 11:13:33] reindex_search
[START] [2020-07-23 11:13:33] normalize_units
[STOP] [2020-07-23 11:13:33] normalize_units
[START] [2020-07-23 11:13:33] calculate_statistics
[2020-07-23 11:13:33] ZERO NODE ANCESTORS. Is this actually a completely flat resource?
[STOP] [2020-07-23 11:13:33] calculate_statistics
[START] [2020-07-23 11:13:33] complete_harvest_instance
[START] [2020-07-23 11:13:33] overall_tsv_creation
[INFO] [2020-07-23 11:13:33] Processing group of 13 in 1 batches of 10000
[INFO] [2020-07-23 11:14:46] 23 Traits (unfiltered)...
[INFO] [2020-07-23 11:15:23] 23 Traits (filtered)...
[INFO] [2020-07-23 11:15:23] 0 Associations (filtered)...
[INFO] [2020-07-23 11:15:23] 56 metadata added.
[INFO] [2020-07-23 11:15:23] 0 metadata added.
[INFO] [2020-07-23 11:15:23] Average Time: 59.58
[INFO] [2020-07-23 11:15:23] Total Time: 1m51s
[STOP] [2020-07-23 11:15:23] overall_tsv_creation
[INFO] [2020-07-23 11:15:23] Done. Check your files:
[INFO] [2020-07-23 11:15:23] (13 lines) /app/public/data/fish_fish_2000/publish_nodes.tsv
[INFO] [2020-07-23 11:15:23] (13 lines) /app/public/data/fish_fish_2000/publish_scientific_names.tsv
[INFO] [2020-07-23 11:15:23] (24 lines) /app/public/data/fish_fish_2000/publish_traits.tsv
[INFO] [2020-07-23 11:15:23] (6 lines) /app/public/data/fish_fish_2000/publish_metadata.tsv
[STOP] [2020-07-23 11:15:23] complete_harvest_instance
[START] [2020-07-23 11:15:23] completed
[STOP] [2020-07-23 11:15:23] completed
[STOP] [2020-07-23 11:15:23] logged process, took 121.2

Latest Process

23 Jul 11:13 EXITED currently processing 0