Harvest for Wyneken 1996 Created 22 Jul 16:48

Stage: completed
Fetched: 22 Jul 16:48
Validated: 22 Jul 16:48
Deltas Created 22 Jul 16:48
Units Normalized: 22 Jul 16:48
Ancestry Built: 22 Jul 16:48
Nodes Matched: 22 Jul 16:48
Names Parsed: 22 Jul 16:48
New Models Stored: 22 Jul 16:48
Indexed: 22 Jul 16:48
Completed: 22 Jul 16:49
Time to Harvest: less than a minute

Harvesting Log

(331 lines)
# Logfile created on 2020-07-22 15:29:43 -0400 by logger.rb/v1.4.2
[START] [2020-07-22 15:29:43] logged process
[START] [2020-07-22 15:29:43] Creating resource from OpenData
[START] [2020-07-22 15:29:44] logged process
[START] [2020-07-22 15:29:44] Parse meta.xml file and create formats with fields
[STOP] [2020-07-22 15:29:44] Parse meta.xml file and create formats with fields
[STOP] [2020-07-22 15:29:44] Creating resource from OpenData
[INFO] [2020-07-22 15:59:54] ## HARVEST: type = -harvest
[START] [2020-07-22 15:59:59] logged process
[START] [2020-07-22 15:59:59] create_harvest_instance
[STOP] [2020-07-22 16:00:00] create_harvest_instance
[START] [2020-07-22 16:00:00] fetch_files
[STOP] [2020-07-22 16:00:00] fetch_files
[START] [2020-07-22 16:00:00] validate_each_file
[STOP] [2020-07-22 16:00:00] validate_each_file
[START] [2020-07-22 16:00:00] convert_to_csv
[CMD] [2020-07-22 16:00:00] /usr/bin/sort /app/public/converted_csv/wyneken_wyneken__nodes_22117.csv > /app/public/converted_csv/wyneken_wyneken__nodes_22117.csv_sorted
[CMD] [2020-07-22 16:00:00] /usr/bin/sort /app/public/converted_csv/wyneken_wyneken__occurrences_22118.csv > /app/public/converted_csv/wyneken_wyneken__occurrences_22118.csv_sorted
[CMD] [2020-07-22 16:00:00] /usr/bin/sort /app/public/converted_csv/wyneken_wyneken__measurements_22119.csv > /app/public/converted_csv/wyneken_wyneken__measurements_22119.csv_sorted
[STOP] [2020-07-22 16:00:00] convert_to_csv
[START] [2020-07-22 16:00:00] calculate_delta
[CMD] [2020-07-22 16:00:00] echo "0a" > /app/public/diff/wyneken_wyneken__nodes_22117.diff
[CMD] [2020-07-22 16:00:00] tail -n +1 /app/public/converted_csv/wyneken_wyneken__nodes_22117.csv >> /app/public/diff/wyneken_wyneken__nodes_22117.diff
[CMD] [2020-07-22 16:00:00] echo "." >> /app/public/diff/wyneken_wyneken__nodes_22117.diff
[CMD] [2020-07-22 16:00:00] echo "0a" > /app/public/diff/wyneken_wyneken__occurrences_22118.diff
[CMD] [2020-07-22 16:00:00] tail -n +1 /app/public/converted_csv/wyneken_wyneken__occurrences_22118.csv >> /app/public/diff/wyneken_wyneken__occurrences_22118.diff
[CMD] [2020-07-22 16:00:00] echo "." >> /app/public/diff/wyneken_wyneken__occurrences_22118.diff
[CMD] [2020-07-22 16:00:00] echo "0a" > /app/public/diff/wyneken_wyneken__measurements_22119.diff
[CMD] [2020-07-22 16:00:00] tail -n +1 /app/public/converted_csv/wyneken_wyneken__measurements_22119.csv >> /app/public/diff/wyneken_wyneken__measurements_22119.diff
[CMD] [2020-07-22 16:00:00] echo "." >> /app/public/diff/wyneken_wyneken__measurements_22119.diff
[STOP] [2020-07-22 16:00:00] calculate_delta
[START] [2020-07-22 16:00:00] parse_diff_and_store
[INFO] [2020-07-22 16:00:00] Loading nodes diff file into memory (true lines)...
[INFO] [2020-07-22 16:00:00] Loading occurrences diff file into memory (true lines)...
[INFO] [2020-07-22 16:00:00] Loading measurements diff file into memory (true lines)...
[INFO] [2020-07-22 16:00:00] Storing 1 ScientificNames
[INFO] [2020-07-22 16:00:00] Processing group of 1 in 1 groups of 1000
[INFO] [2020-07-22 16:00:00] Average Time: 0.0
[INFO] [2020-07-22 16:00:00] Total Time: 1s
[INFO] [2020-07-22 16:00:00] Storing 1 Nodes
[INFO] [2020-07-22 16:00:00] Processing group of 1 in 1 groups of 1000
[INFO] [2020-07-22 16:00:00] Average Time: 0.0
[INFO] [2020-07-22 16:00:00] Total Time: 1s
[INFO] [2020-07-22 16:00:00] Storing 1 Occurrences
[INFO] [2020-07-22 16:00:00] Processing group of 1 in 1 groups of 1000
[INFO] [2020-07-22 16:00:00] Average Time: 0.0
[INFO] [2020-07-22 16:00:00] Total Time: 1s
[INFO] [2020-07-22 16:00:00] Storing 1 OccurrenceMetadata
[INFO] [2020-07-22 16:00:00] Processing group of 1 in 1 groups of 1000
[INFO] [2020-07-22 16:00:00] Average Time: 0.0
[INFO] [2020-07-22 16:00:00] Total Time: 1s
[INFO] [2020-07-22 16:00:00] Storing 4 Traits
[INFO] [2020-07-22 16:00:00] Processing group of 4 in 1 groups of 1000
[INFO] [2020-07-22 16:00:00] Average Time: 0.0
[INFO] [2020-07-22 16:00:00] Total Time: 1s
[INFO] [2020-07-22 16:00:00] Storing 5 MetaTraits
[INFO] [2020-07-22 16:00:00] Processing group of 5 in 1 groups of 1000
[INFO] [2020-07-22 16:00:00] Average Time: 0.0
[INFO] [2020-07-22 16:00:00] Total Time: 1s
[STOP] [2020-07-22 16:00:00] parse_diff_and_store
[START] [2020-07-22 16:00:00] resolve_keys
[INFO] [2020-07-22 16:00:07] Occurrences to nodes (through scientific_names)...
[INFO] [2020-07-22 16:00:07] traits to occurrences...
[INFO] [2020-07-22 16:00:07] traits to nodes (through occurrences)...
[INFO] [2020-07-22 16:00:07] Traits to sex term...
[INFO] [2020-07-22 16:00:07] Traits to lifestage term...
[INFO] [2020-07-22 16:00:07] MetaTraits to traits...
[INFO] [2020-07-22 16:00:07] MetaTraits (simple, measurement row refers to parent) to traits...
[INFO] [2020-07-22 16:00:07] Assocs to occurrences...
[INFO] [2020-07-22 16:00:07] Assocs to nodes...
[INFO] [2020-07-22 16:00:07] Assoc to sex term...
[INFO] [2020-07-22 16:00:07] Assoc to lifestage term...
[STOP] [2020-07-22 16:00:07] resolve_keys
[START] [2020-07-22 16:00:07] hold_for_later_1
[STOP] [2020-07-22 16:00:07] hold_for_later_1
[START] [2020-07-22 16:00:07] hold_for_later_2
[STOP] [2020-07-22 16:00:07] hold_for_later_2
[START] [2020-07-22 16:00:07] resolve_missing_parents
[STOP] [2020-07-22 16:00:07] resolve_missing_parents
[START] [2020-07-22 16:00:07] rebuild_nodes
[START] [2020-07-22 16:00:07] Flattener#flatten
[START] [2020-07-22 16:00:07] Flattener#study_resource
[START] [2020-07-22 16:00:07] Flattener#build_ancestry
[STOP] [2020-07-22 16:00:07] Flattener#build_ancestry
[INFO] [2020-07-22 16:00:07] 1 ancestry keys
[START] [2020-07-22 16:00:07] build_node_ancestors
[INFO] [2020-07-22 16:00:07] old ancestors deleted.
[STOP] [2020-07-22 16:00:07] build_node_ancestors
[WARN] [2020-07-22 16:00:07] Flattener: nothing to flatten! (Completely flat resource?)
[STOP] [2020-07-22 16:00:07] Flattener#flatten
[STOP] [2020-07-22 16:00:07] rebuild_nodes
[START] [2020-07-22 16:00:07] resolve_missing_media_owners
[STOP] [2020-07-22 16:00:07] resolve_missing_media_owners
[START] [2020-07-22 16:00:07] sanitize_media_verbatims
[STOP] [2020-07-22 16:00:07] sanitize_media_verbatims
[START] [2020-07-22 16:00:07] queue_downloads
[STOP] [2020-07-22 16:00:07] queue_downloads
[START] [2020-07-22 16:00:07] parse_names
[WARN] [2020-07-22 16:00:07] I see 1 names which still need to be parsed.
[STOP] [2020-07-22 16:00:08] parse_names
[START] [2020-07-22 16:00:08] denormalize_canonical_names_to_nodes
[STOP] [2020-07-22 16:00:08] denormalize_canonical_names_to_nodes
[START] [2020-07-22 16:00:08] match_nodes
[START] [2020-07-22 16:00:08] map_all_nodes_to_pages
[STOP] [2020-07-22 16:00:08] map_all_nodes_to_pages
[INFO] [2020-07-22 16:00:08] ZERO unmatched nodes (of 1)! Nicely done.
[START] [2020-07-22 16:00:08] update_nodes
[STOP] [2020-07-22 16:00:08] update_nodes
[STOP] [2020-07-22 16:00:08] match_nodes
[START] [2020-07-22 16:00:08] reindex_search
[STOP] [2020-07-22 16:00:08] reindex_search
[START] [2020-07-22 16:00:08] normalize_units
[STOP] [2020-07-22 16:00:08] normalize_units
[START] [2020-07-22 16:00:08] calculate_statistics
[2020-07-22 16:00:08] ZERO NODE ANCESTORS. Is this actually a completely flat resource?
[STOP] [2020-07-22 16:00:08] calculate_statistics
[START] [2020-07-22 16:00:08] complete_harvest_instance
[START] [2020-07-22 16:00:08] overall_tsv_creation
[INFO] [2020-07-22 16:00:08] Processing group of 1 in 1 batches of 10000
[INFO] [2020-07-22 16:00:57] 2 Traits (unfiltered)...
[INFO] [2020-07-22 16:01:32] 2 Traits (filtered)...
[INFO] [2020-07-22 16:01:32] 0 Associations (filtered)...
[INFO] [2020-07-22 16:01:32] 9 metadata added.
[INFO] [2020-07-22 16:01:32] 0 metadata added.
[INFO] [2020-07-22 16:01:32] Average Time: 56.83
[INFO] [2020-07-22 16:01:32] Total Time: 1m25s
[STOP] [2020-07-22 16:01:32] overall_tsv_creation
[INFO] [2020-07-22 16:01:32] Done. Check your files:
[INFO] [2020-07-22 16:01:32] (1 lines) /app/public/data/wyneken_wyneken_/publish_nodes.tsv
[INFO] [2020-07-22 16:01:32] (1 lines) /app/public/data/wyneken_wyneken_/publish_scientific_names.tsv
[INFO] [2020-07-22 16:01:32] (3 lines) /app/public/data/wyneken_wyneken_/publish_traits.tsv
[INFO] [2020-07-22 16:01:32] (5 lines) /app/public/data/wyneken_wyneken_/publish_metadata.tsv
[STOP] [2020-07-22 16:01:32] complete_harvest_instance
[START] [2020-07-22 16:01:32] completed
[STOP] [2020-07-22 16:01:32] completed
[STOP] [2020-07-22 16:01:32] logged process, took 93.8
[INFO] [2020-07-22 16:48:08] ## HARVEST: type = re_download_opendata_-harvest
[INFO] [2020-07-22 16:48:08] ## remove_type: ScientificName
[INFO] [2020-07-22 16:48:08] ++ Calling delete_all on 1 instances...
[INFO] [2020-07-22 16:48:08] [16:48:08.553] Removed 1 Scientificnames
[INFO] [2020-07-22 16:48:08] ## remove_type: Vernacular
[INFO] [2020-07-22 16:48:08] ++ Calling delete_all on 0 instances...
[INFO] [2020-07-22 16:48:08] [16:48:08.555] Removed 0 Vernaculars
[INFO] [2020-07-22 16:48:08] ## remove_type: Article
[INFO] [2020-07-22 16:48:08] ++ Calling delete_all on 0 instances...
[INFO] [2020-07-22 16:48:08] [16:48:08.558] Removed 0 Articles
[INFO] [2020-07-22 16:48:08] ## remove_type: Medium
[INFO] [2020-07-22 16:48:08] ++ Calling delete_all on 0 instances...
[INFO] [2020-07-22 16:48:08] [16:48:08.561] Removed 0 Media
[INFO] [2020-07-22 16:48:08] ## remove_type: Trait
[INFO] [2020-07-22 16:48:08] ++ Calling delete_all on 4 instances...
[INFO] [2020-07-22 16:48:08] [16:48:08.565] Removed 4 Traits
[INFO] [2020-07-22 16:48:08] ## remove_type: MetaTrait
[INFO] [2020-07-22 16:48:08] ++ Calling delete_all on 5 instances...
[INFO] [2020-07-22 16:48:08] [16:48:08.568] Removed 5 Metatraits
[INFO] [2020-07-22 16:48:08] ## remove_type: OccurrenceMetadatum
[INFO] [2020-07-22 16:48:08] ++ Calling delete_all on 1 instances...
[INFO] [2020-07-22 16:48:08] [16:48:08.571] Removed 1 Occurrencemetadata
[INFO] [2020-07-22 16:48:08] ## remove_type: Assoc
[INFO] [2020-07-22 16:48:08] ++ Calling delete_all on 0 instances...
[INFO] [2020-07-22 16:48:08] [16:48:08.573] Removed 0 Assocs
[INFO] [2020-07-22 16:48:08] ## remove_type: MetaAssoc
[INFO] [2020-07-22 16:48:08] ++ Calling delete_all on 0 instances...
[INFO] [2020-07-22 16:48:08] [16:48:08.575] Removed 0 Metaassocs
[INFO] [2020-07-22 16:48:08] ## remove_type: Identifier
[INFO] [2020-07-22 16:48:08] ++ Calling delete_all on 0 instances...
[INFO] [2020-07-22 16:48:08] [16:48:08.577] Removed 0 Identifiers
[INFO] [2020-07-22 16:48:08] ## remove_type: Reference
[INFO] [2020-07-22 16:48:08] ++ Calling delete_all on 0 instances...
[INFO] [2020-07-22 16:48:08] [16:48:08.580] Removed 0 References
[INFO] [2020-07-22 16:48:08] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:08] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:08] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:08] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:08] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:08] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:08] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:08] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:08] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:08] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:08] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:09] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:09] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:09] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:09] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:09] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:09] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:09] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:09] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:09] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:09] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:09] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:09] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:09] Starting batch with ID 80633681...
[INFO] [2020-07-22 16:48:09] ## remove_type: Node
[INFO] [2020-07-22 16:48:09] ++ Calling delete_all on 1 instances...
[INFO] [2020-07-22 16:48:09] [16:48:09.293] Removed 1 Nodes
[START] [2020-07-22 16:48:09] logged process
[START] [2020-07-22 16:48:09] Creating resource from OpenData
[START] [2020-07-22 16:48:09] logged process
[START] [2020-07-22 16:48:09] Parse meta.xml file and create formats with fields
[STOP] [2020-07-22 16:48:09] Parse meta.xml file and create formats with fields
[STOP] [2020-07-22 16:48:09] Creating resource from OpenData
[START] [2020-07-22 16:48:09] logged process
[START] [2020-07-22 16:48:09] create_harvest_instance
[STOP] [2020-07-22 16:48:10] create_harvest_instance
[START] [2020-07-22 16:48:10] fetch_files
[STOP] [2020-07-22 16:48:10] fetch_files
[START] [2020-07-22 16:48:10] validate_each_file
[STOP] [2020-07-22 16:48:10] validate_each_file
[START] [2020-07-22 16:48:10] convert_to_csv
[CMD] [2020-07-22 16:48:10] /usr/bin/sort /app/public/converted_csv/wyneken_wyneken__nodes_22123.csv > /app/public/converted_csv/wyneken_wyneken__nodes_22123.csv_sorted
[CMD] [2020-07-22 16:48:10] /usr/bin/sort /app/public/converted_csv/wyneken_wyneken__occurrences_22124.csv > /app/public/converted_csv/wyneken_wyneken__occurrences_22124.csv_sorted
[CMD] [2020-07-22 16:48:10] /usr/bin/sort /app/public/converted_csv/wyneken_wyneken__measurements_22125.csv > /app/public/converted_csv/wyneken_wyneken__measurements_22125.csv_sorted
[STOP] [2020-07-22 16:48:10] convert_to_csv
[START] [2020-07-22 16:48:10] calculate_delta
[CMD] [2020-07-22 16:48:10] echo "0a" > /app/public/diff/wyneken_wyneken__nodes_22123.diff
[CMD] [2020-07-22 16:48:10] tail -n +1 /app/public/converted_csv/wyneken_wyneken__nodes_22123.csv >> /app/public/diff/wyneken_wyneken__nodes_22123.diff
[CMD] [2020-07-22 16:48:11] echo "." >> /app/public/diff/wyneken_wyneken__nodes_22123.diff
[CMD] [2020-07-22 16:48:11] echo "0a" > /app/public/diff/wyneken_wyneken__occurrences_22124.diff
[CMD] [2020-07-22 16:48:11] tail -n +1 /app/public/converted_csv/wyneken_wyneken__occurrences_22124.csv >> /app/public/diff/wyneken_wyneken__occurrences_22124.diff
[CMD] [2020-07-22 16:48:11] echo "." >> /app/public/diff/wyneken_wyneken__occurrences_22124.diff
[CMD] [2020-07-22 16:48:11] echo "0a" > /app/public/diff/wyneken_wyneken__measurements_22125.diff
[CMD] [2020-07-22 16:48:11] tail -n +1 /app/public/converted_csv/wyneken_wyneken__measurements_22125.csv >> /app/public/diff/wyneken_wyneken__measurements_22125.diff
[CMD] [2020-07-22 16:48:11] echo "." >> /app/public/diff/wyneken_wyneken__measurements_22125.diff
[STOP] [2020-07-22 16:48:11] calculate_delta
[START] [2020-07-22 16:48:11] parse_diff_and_store
[INFO] [2020-07-22 16:48:11] Loading nodes diff file into memory (true lines)...
[INFO] [2020-07-22 16:48:11] Loading occurrences diff file into memory (true lines)...
[INFO] [2020-07-22 16:48:11] Loading measurements diff file into memory (true lines)...
[INFO] [2020-07-22 16:48:11] Storing 1 ScientificNames
[INFO] [2020-07-22 16:48:11] Processing group of 1 in 1 groups of 1000
[INFO] [2020-07-22 16:48:11] Average Time: 0.0
[INFO] [2020-07-22 16:48:11] Total Time: 1s
[INFO] [2020-07-22 16:48:11] Storing 1 Nodes
[INFO] [2020-07-22 16:48:11] Processing group of 1 in 1 groups of 1000
[INFO] [2020-07-22 16:48:11] Average Time: 0.0
[INFO] [2020-07-22 16:48:11] Total Time: 1s
[INFO] [2020-07-22 16:48:11] Storing 2 Occurrences
[INFO] [2020-07-22 16:48:11] Processing group of 2 in 1 groups of 1000
[INFO] [2020-07-22 16:48:11] Average Time: 0.0
[INFO] [2020-07-22 16:48:11] Total Time: 1s
[INFO] [2020-07-22 16:48:11] Storing 1 OccurrenceMetadata
[INFO] [2020-07-22 16:48:11] Processing group of 1 in 1 groups of 1000
[INFO] [2020-07-22 16:48:11] Average Time: 0.0
[INFO] [2020-07-22 16:48:11] Total Time: 1s
[INFO] [2020-07-22 16:48:11] Storing 4 Traits
[INFO] [2020-07-22 16:48:11] Processing group of 4 in 1 groups of 1000
[INFO] [2020-07-22 16:48:11] Average Time: 0.0
[INFO] [2020-07-22 16:48:11] Total Time: 1s
[INFO] [2020-07-22 16:48:11] Storing 5 MetaTraits
[INFO] [2020-07-22 16:48:11] Processing group of 5 in 1 groups of 1000
[INFO] [2020-07-22 16:48:11] Average Time: 0.0
[INFO] [2020-07-22 16:48:11] Total Time: 1s
[STOP] [2020-07-22 16:48:11] parse_diff_and_store
[START] [2020-07-22 16:48:11] resolve_keys
[INFO] [2020-07-22 16:48:17] Occurrences to nodes (through scientific_names)...
[INFO] [2020-07-22 16:48:17] traits to occurrences...
[INFO] [2020-07-22 16:48:17] traits to nodes (through occurrences)...
[INFO] [2020-07-22 16:48:17] Traits to sex term...
[INFO] [2020-07-22 16:48:17] Traits to lifestage term...
[INFO] [2020-07-22 16:48:17] MetaTraits to traits...
[INFO] [2020-07-22 16:48:17] MetaTraits (simple, measurement row refers to parent) to traits...
[INFO] [2020-07-22 16:48:17] Assocs to occurrences...
[INFO] [2020-07-22 16:48:17] Assocs to nodes...
[INFO] [2020-07-22 16:48:17] Assoc to sex term...
[INFO] [2020-07-22 16:48:17] Assoc to lifestage term...
[STOP] [2020-07-22 16:48:17] resolve_keys
[START] [2020-07-22 16:48:17] hold_for_later_1
[STOP] [2020-07-22 16:48:17] hold_for_later_1
[START] [2020-07-22 16:48:17] hold_for_later_2
[STOP] [2020-07-22 16:48:17] hold_for_later_2
[START] [2020-07-22 16:48:17] resolve_missing_parents
[STOP] [2020-07-22 16:48:17] resolve_missing_parents
[START] [2020-07-22 16:48:17] rebuild_nodes
[START] [2020-07-22 16:48:17] Flattener#flatten
[START] [2020-07-22 16:48:17] Flattener#study_resource
[START] [2020-07-22 16:48:17] Flattener#build_ancestry
[STOP] [2020-07-22 16:48:17] Flattener#build_ancestry
[INFO] [2020-07-22 16:48:17] 1 ancestry keys
[START] [2020-07-22 16:48:17] build_node_ancestors
[INFO] [2020-07-22 16:48:17] old ancestors deleted.
[STOP] [2020-07-22 16:48:17] build_node_ancestors
[WARN] [2020-07-22 16:48:17] Flattener: nothing to flatten! (Completely flat resource?)
[STOP] [2020-07-22 16:48:17] Flattener#flatten
[STOP] [2020-07-22 16:48:17] rebuild_nodes
[START] [2020-07-22 16:48:17] resolve_missing_media_owners
[STOP] [2020-07-22 16:48:17] resolve_missing_media_owners
[START] [2020-07-22 16:48:17] sanitize_media_verbatims
[STOP] [2020-07-22 16:48:17] sanitize_media_verbatims
[START] [2020-07-22 16:48:17] queue_downloads
[STOP] [2020-07-22 16:48:17] queue_downloads
[START] [2020-07-22 16:48:17] parse_names
[WARN] [2020-07-22 16:48:17] I see 1 names which still need to be parsed.
[STOP] [2020-07-22 16:48:19] parse_names
[START] [2020-07-22 16:48:19] denormalize_canonical_names_to_nodes
[STOP] [2020-07-22 16:48:19] denormalize_canonical_names_to_nodes
[START] [2020-07-22 16:48:19] match_nodes
[START] [2020-07-22 16:48:19] map_all_nodes_to_pages
[STOP] [2020-07-22 16:48:19] map_all_nodes_to_pages
[INFO] [2020-07-22 16:48:19] ZERO unmatched nodes (of 1)! Nicely done.
[START] [2020-07-22 16:48:19] update_nodes
[STOP] [2020-07-22 16:48:19] update_nodes
[STOP] [2020-07-22 16:48:19] match_nodes
[START] [2020-07-22 16:48:19] reindex_search
[STOP] [2020-07-22 16:48:19] reindex_search
[START] [2020-07-22 16:48:19] normalize_units
[STOP] [2020-07-22 16:48:19] normalize_units
[START] [2020-07-22 16:48:19] calculate_statistics
[2020-07-22 16:48:19] ZERO NODE ANCESTORS. Is this actually a completely flat resource?
[STOP] [2020-07-22 16:48:19] calculate_statistics
[START] [2020-07-22 16:48:19] complete_harvest_instance
[START] [2020-07-22 16:48:19] overall_tsv_creation
[INFO] [2020-07-22 16:48:19] Processing group of 1 in 1 batches of 10000
[INFO] [2020-07-22 16:49:07] 2 Traits (unfiltered)...
[INFO] [2020-07-22 16:49:42] 2 Traits (filtered)...
[INFO] [2020-07-22 16:49:42] 0 Associations (filtered)...
[INFO] [2020-07-22 16:49:42] 8 metadata added.
[INFO] [2020-07-22 16:49:42] 0 metadata added.
[INFO] [2020-07-22 16:49:42] Average Time: 56.68
[INFO] [2020-07-22 16:49:42] Total Time: 1m24s
[STOP] [2020-07-22 16:49:42] overall_tsv_creation
[INFO] [2020-07-22 16:49:42] Done. Check your files:
[INFO] [2020-07-22 16:49:42] (1 lines) /app/public/data/wyneken_wyneken_/publish_nodes.tsv
[INFO] [2020-07-22 16:49:42] (1 lines) /app/public/data/wyneken_wyneken_/publish_scientific_names.tsv
[INFO] [2020-07-22 16:49:42] (3 lines) /app/public/data/wyneken_wyneken_/publish_traits.tsv
[INFO] [2020-07-22 16:49:42] (4 lines) /app/public/data/wyneken_wyneken_/publish_metadata.tsv
[STOP] [2020-07-22 16:49:42] complete_harvest_instance
[START] [2020-07-22 16:49:42] completed
[STOP] [2020-07-22 16:49:42] completed
[STOP] [2020-07-22 16:49:42] logged process, took 93.01

Latest Process